Locus 8675

Sequence ID 3R_DroMel_CAF1
Location 23,177,884 – 23,177,979
Length 95
Max. P 0.962461
window13933

overview

Window 3

Location 23,177,884 – 23,177,979
Length 95
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.57
Mean single sequence MFE -26.55
Consensus MFE -14.62
Energy contribution -16.03
Covariance contribution 1.42
Combinations/Pair 1.10
Mean z-score -2.32
Structure conservation index 0.55
SVM decision value 1.54
SVM RNA-class probability 0.962461
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23177884 95 - 27905053
UGUAAAACUUCAGCUUCGAAUUCUUGGCUAAAUUGCGGUUUAAAGUUGAAGGCAAGAGCUGC---UAUGUGUAGCUUCAGAACAACA-------GCGAG----AAGUGA
(((....(((((((((..((((....((......))))))..)))))))))....(((((((---.....)))))))....)))...-------.....----...... ( -23.80)
>DroSec_CAF1 20811 84 - 1
UGUAAAACUUCAGCUUCGAAUUCUUGGCUAAAUUGAGGUUUAAAGUUGAAGGCAGGAGCUGC---UAUGUGUAGCU------------------GCGAG----AAGUGA
.......(((((((((..(((.((..(.....)..)))))..)))))))))...(.((((((---.....))))))------------------.)...----...... ( -25.80)
>DroSim_CAF1 10564 84 - 1
UGUAAAACUUCAGCUUCGAAUUCUUGGCUAAAUUGCGGUUUAAAGUUGAAGGCAGGAGCUGC---UAUGUGUAGCU------------------GCGAG----AAGUGA
.......(((((((((..((((....((......))))))..)))))))))...(.((((((---.....))))))------------------.)...----...... ( -25.00)
>DroEre_CAF1 24776 97 - 1
UGUAAAACUUCAGCUCCGAACUCUCGGCUAAAUUGCGGUUUAAAGUUGAA-GCAGCAGCUACAAGUAUAUGUAGCUGCAGAACAACA-------ACGAG----AAGUGA
(((....((((((((..(((((....((......)))))))..)))))))-)..(((((((((......)))))))))...)))...-------.....----...... ( -29.70)
>DroYak_CAF1 11363 92 - 1
UGUAAAACUUCAGCUUCGAACUCUCGGCUAAAUUGCGGUUUAAAGUUGAAGGCAGUAGCUACA------CGUAGCUGCUGAACAACA-------GCGAG----AAGUGA
(((....(((((((((..((((....((......))))))..))))))))).(((((((((..------..))))))))).)))...-------.....----...... ( -31.30)
>DroPer_CAF1 18060 97 - 1
UGUAAAACUUCAGUUUCGAACUCUUGGGUAAAUUGCGGUUUAAACUUGAAGCCGGCAA----------AGGUAACG--AGAGCAACGAGUGGGAGUGAGCCACCAGUGA
.((...(((((...((((..((((((......(((((((((.......))))).))))----------......))--))))...))))..)))))..))......... ( -23.70)
>consensus
UGUAAAACUUCAGCUUCGAACUCUUGGCUAAAUUGCGGUUUAAAGUUGAAGGCAGGAGCUGC___UAUGUGUAGCU__AGAACAACA_______GCGAG____AAGUGA
.......(((((((((..((((....((......))))))..))))))))).....((((((........))))))................................. (-14.62 = -16.03 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:59 2006