Locus 8673

Sequence ID 3R_DroMel_CAF1
Location 23,160,121 – 23,160,239
Length 118
Max. P 0.927904
window13930

overview

Window 0

Location 23,160,121 – 23,160,239
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -34.30
Consensus MFE -32.95
Energy contribution -33.07
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.20
Structure conservation index 0.96
SVM decision value 1.19
SVM RNA-class probability 0.927904
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23160121 118 - 27905053
--UAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGUAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUUCAUUUCAUGGAGUUCCCAUUCCUGUCCAGU
--(((((((....))))))).(((((((......)))))))(((..((((.(((....))).)))((((....((((((((.(((((....)))))))))))))..)))).)..)))... ( -31.30)
>DroSec_CAF1 10188 120 - 1
UGUAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGCGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUACCAUUCCAGUCCAGU
.((((((((....))))))))(((((((......))))))).((((((..((((.(((((.......)))))))))(((((.(((((....))))))))))))))))............. ( -36.90)
>DroSim_CAF1 15494 120 - 1
UGUAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUACCAUUCCAGUCCAGU
.((((((((....))))))))(((((((......))))))).((((((..((((.(((((.......)))))))))(((((.(((((....))))))))))))))))............. ( -34.70)
>consensus
UGUAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUACCAUUCCAGUCCAGU
.((((((((....))))))))(((((((......)))))))((((((........(((((.......))))).((((((((.(((((....))))))))))))).))))))......... (-32.95 = -33.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:56 2006