Locus 8671

Sequence ID 3R_DroMel_CAF1
Location 23,158,728 – 23,158,848
Length 120
Max. P 0.773034
window13925

overview

Window 5

Location 23,158,728 – 23,158,848
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -30.00
Consensus MFE -29.62
Energy contribution -29.40
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.72
Structure conservation index 0.99
SVM decision value 0.53
SVM RNA-class probability 0.773034
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23158728 120 - 27905053
UCCAAACUGACCGCAAAGCAUUUGCACUUUGGACUUUAUGCCAAGGCGGCGUUGAAAGCCAAACGAAGUCGUCGGCAGCGUCGACGUUAAAUAAUAACAAUAAAAACCCAACCAAGGGCA
............((...((....)).(((((((((((..((....))(((.......)))....))))))((((((...))))))((((.....))))..............))))))). ( -30.40)
>DroSec_CAF1 9243 120 - 1
UCCAAACUGACCGCAAAGCAUUUGCACUUUGGACUUUAUGCCAAGGCGGCGUUGAAAGCCAAACGAAGUCGUCGGCAGCGUCGACGUUAAAUAAUAACAAUAAAAACCCAACCAAAGGCA
............((...((....)).(((((((((((..((....))(((.......)))....))))))((((((...))))))((((.....))))..............))))))). ( -30.70)
>DroSim_CAF1 14065 120 - 1
UCCAAACUGACCGCAAAGCAUUUGCACUUUGGACUUUAUGCCAAGGCGGCGUUGAAAGCCAAACGAAGUCGUCGGCAGCGUCGACGUUAAAUAAUAACAAUAAAAACCCAACCAAAGCCA
............((((.....)))).(((((((((((..((....))(((.......)))....))))))((((((...))))))((((.....))))..............)))))... ( -28.90)
>consensus
UCCAAACUGACCGCAAAGCAUUUGCACUUUGGACUUUAUGCCAAGGCGGCGUUGAAAGCCAAACGAAGUCGUCGGCAGCGUCGACGUUAAAUAAUAACAAUAAAAACCCAACCAAAGGCA
............((((.....)))).(((((((((((..((....))(((.......)))....))))))((((((...))))))((((.....))))..............)))))... (-29.62 = -29.40 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:51 2006