Locus 867

Sequence ID 3R_DroMel_CAF1
Location 2,919,659 – 2,919,754
Length 95
Max. P 0.804755
window1379

overview

Window 9

Location 2,919,659 – 2,919,754
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 70.25
Mean single sequence MFE -26.98
Consensus MFE -6.26
Energy contribution -8.30
Covariance contribution 2.04
Combinations/Pair 1.16
Mean z-score -1.91
Structure conservation index 0.23
SVM decision value 0.63
SVM RNA-class probability 0.804755
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2919659 95 + 27905053
UUCUUGACA---------------A--UGCUAUCGUGAGAAAAAUCAUGCCCGUUGCUGGAUUUGAAACGAGU------UCCGA--AACUGUAAAGUUUCCUGGAAUCAGUUCAUCGUCA
.(((.(.((---------------(--((....(((((......)))))..)))))).)))..((((.(..((------(((((--((((....))))))..)))))..)))))...... ( -22.10)
>DroSec_CAF1 9321 105 + 1
U-CUUGUCACGAUCUAUCGUGAUCACGAGCUAUCGUGAGAAAAAUCACGCACGCUGCUGG------AACUAGU------UCCAA--AACUUUAAAGUUUCCUGGAAUUAGUUCAUCGUCA
.-...(((((((....))))))).((((((...(((((......)))))...)).....(------(((((((------(((((--((((....)))))..)))))))))))).)))).. ( -36.20)
>DroSim_CAF1 10610 105 + 1
U-CUUGUCACGAACUAUCGUGAUCACGAGCUAUCGUGAGAAAAAUAACGCUCGCUGCUGG------AACUAGU------UCCAA--AACUUUAAAGUUUCCUGGAAUUAGUUCAUCGUCA
.-....((((((....))))))((((((....))))))((........((.....))..(------(((((((------(((((--((((....)))))..)))))))))))).)).... ( -34.00)
>DroEre_CAF1 10739 114 + 1
U-UUCAUCUUUAUGU-CCGUGACAU--UGCGAUCGUGAA-AAAAUCACGUCCGAUGCUGCAUUUGAAACUAGUUCCAGUUCCACUGCACUGUAAAGUUUCCGA-AAUUAGUUCAUCGUCA
(-(((..........-..((..(((--((.((.(((((.-....))))))))))))..))....(((((((((..(((.....))).)))....)))))).))-)).............. ( -22.70)
>DroYak_CAF1 8052 109 + 1
U-UUGAUCUUAAAGU--CGUGACAA--UGCGAUCGUGAGGAAAAUCAAGUCCGGUGCUGCAUUUGAAACUAGU------UCCACUGCAUUGCAAAGUUCCCUAGAAUUAGUUUAUUGUCA
.-..(((......))--).((((((--((((((.(((.((((..((((((.((....)).))))))......)------))).).)))))))..(((((....))))).....))))))) ( -19.90)
>consensus
U_CUUGUCACGAACU__CGUGACAA__UGCUAUCGUGAGAAAAAUCACGCCCGCUGCUGGAUUUGAAACUAGU______UCCAA__AACUGUAAAGUUUCCUGGAAUUAGUUCAUCGUCA
....................(((.....((...(((((......)))))......)).........(((((((......((((...((((....))))...)))))))))))....))). ( -6.26 =  -8.30 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:09 2006