Locus 8669

Sequence ID 3R_DroMel_CAF1
Location 23,157,319 – 23,157,439
Length 120
Max. P 0.815692
window13922

overview

Window 2

Location 23,157,319 – 23,157,439
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -23.60
Consensus MFE -21.38
Energy contribution -21.38
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.91
SVM decision value 0.66
SVM RNA-class probability 0.815692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23157319 120 + 27905053
GCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCACACAUUCUCCCAUCAAUAAGAUGCCACCCACUCUGGCAGACAAUUCCCUGCGACACAUAACUUCCAAUUGAAAAUAUC
(((((........)))))...............(((((((((...........(((.....)))((((.......))))...........)))))))))..................... ( -22.60)
>DroSec_CAF1 7981 120 + 1
GCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCAGACACUCUCCCAUCAAUAGGAUGCCACCCACUCGGGCAGACAAUUCCCUGCGACACAUAACUUCCAAUUGAAAAUAUC
(((((........)))))...............((((((((((......(((........)))((((.........)))).........))))))))))..................... ( -27.00)
>DroSim_CAF1 12540 120 + 1
GCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCACACAUUCUCCCAUCAAUAAGAUGCCACCCACUCGGGCAGACAAUUCCCUGCGACACAUAACUUCCAAUUGAAAAUAUC
(((((........)))))...............(((((((((..........((((.....))))...(((....)))............)))))))))..................... ( -23.50)
>DroYak_CAF1 12546 117 + 1
GCAACAUCCGUCAGUUGCCCUCCAUUAAAUUGUUGUGUUGCACACAA---CCCAUCAAUAAGAUGCCACCCACUCCGGCAGACAAUUCCCUGCGACACAUAACUUCCAAUUGAAAAUAUC
(((((........)))))...............(((((((((.....---...(((.....)))(((.........)))...........)))))))))..................... ( -21.30)
>consensus
GCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCACACAUUCUCCCAUCAAUAAGAUGCCACCCACUCGGGCAGACAAUUCCCUGCGACACAUAACUUCCAAUUGAAAAUAUC
(((((........)))))...............(((((((((...........(((.....)))(((.........)))...........)))))))))..................... (-21.38 = -21.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:48 2006