Locus 8665

Sequence ID 3R_DroMel_CAF1
Location 23,154,532 – 23,154,652
Length 120
Max. P 0.878258
window13915

overview

Window 5

Location 23,154,532 – 23,154,652
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -47.65
Consensus MFE -44.15
Energy contribution -44.40
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.93
SVM decision value 0.90
SVM RNA-class probability 0.878258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23154532 120 + 27905053
AAUGGUCAAUGGGUGGCCCAUAAACAAAUGAAGGGUCGUGCUUCGGGGGACCCAGCUGCGUAUGCGGCAUAUUUGAGCGGGCAUGGCGAAAAAUUGUCAAACUGCCGGCCGCGGCCCCAA
...........((.(((((.....((((((..(((((.(.(....).)))))).(((((....))))).)))))).((.((((((((((....))))))...)))).)).).)))))).. ( -48.20)
>DroSec_CAF1 5310 120 + 1
AAUGGUCGAAGGGUGGCACAUAAACAAAUGAAGGGUCGUGCUUCGGGGGACCCAGCUGCGUAUGCGGCAUAUUUGAGCGGGCAUGGCGAAAAAUUGUCAAACUGCCGGCCGCGGCCCCAA
..........((((.((.......((((((..(((((.(.(....).)))))).(((((....))))).)))))).((.((((((((((....))))))...)))).)).)).))))... ( -48.70)
>DroSim_CAF1 9789 120 + 1
AAUGGUCGAUGGGUGGCCCAUAAACAAAUGAAGGGUCGUGCUUCGGGGGACCCAGCUGCGUAUGCGGCAUAUUUGAGCGGGCAUGGCGAAAAAUUGUCAAAUUGCCGGCCGCGGCCCCAA
...((((((((((...)))))...((((((..(((((.(.(....).)))))).(((((....))))).)))))).((.((((((((((....))))))...)))).))..))))).... ( -48.30)
>DroYak_CAF1 9759 120 + 1
AAUGGUCGAUGGGUGGCCCAUAAACAAAUGAAGGGUCGUGCUUCGGGGUACCCAGCUGCGUAUGCGGCAUAUUUGAGCGGGCAUGGCGAAAAAUUGUCAAACUGCCGGCCGCGGCCCCAA
...(((((.((((((.(((((......))((((.......))))))).))))))(((((....)))))......(.((.((((((((((....))))))...)))).))).))))).... ( -45.40)
>consensus
AAUGGUCGAUGGGUGGCCCAUAAACAAAUGAAGGGUCGUGCUUCGGGGGACCCAGCUGCGUAUGCGGCAUAUUUGAGCGGGCAUGGCGAAAAAUUGUCAAACUGCCGGCCGCGGCCCCAA
..........((((.((.......((((((..(((((.(.(...).).))))).(((((....))))).)))))).((.((((((((((....))))))...)))).)).)).))))... (-44.15 = -44.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:41 2006