Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,153,784 – 23,153,904 |
Length | 120 |
Max. P | 0.972104 |
Location | 23,153,784 – 23,153,904 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.47 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -28.04 |
Energy contribution | -27.54 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -2.06 |
Structure conservation index | 0.94 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23153784 120 + 27905053 CGCCAUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCCGCAACUAUCCUUCCAACAUUGUACCCACCCCUAUCUCA .((.((((((((.((((((..............)))))).)).((((((....)).)))).((((((.((((....)).)).)))))).......)))))).))................ ( -28.64) >DroSec_CAF1 4614 119 + 1 CGCCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCCGCAACUAUCCUUCCAACAUUGCACCCAUCCC-AUCUCC .((.((((((((.((((((..............)))))).)).((((((....)).)))).((((((.((((....)).)).)))))).......)))))).)).........-...... ( -31.34) >DroSim_CAF1 9091 119 + 1 CGCCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCUGCAACUAUCCUUCCAACAUUGUACCCAUACC-AUCUCC ....((((.(.(((..((((..((.........)).(((((..((((((....)).)))).((((((.((((....)).)).)))))).)))))..))))..))).).)))).-...... ( -29.30) >DroYak_CAF1 9062 119 + 1 CACCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUGGUGCGGCAACGUCACACAGUUGCCGGUCCAACGAUCCCGCAACUAUCCUCUCACUAUUGUUACCAGCGC-AUCUCA ....((((((...((((((..............)))))).(((((((((....))......((((((.((((....)).)).)))))).......))))))).....))))))-...... ( -29.64) >consensus CGCCGUGUUGUUGCUUUGUUACGUUAUCUAAUUACAAAGGAAUUGUGCGGCAACGUCACACAGUUGCCGGUCCACCGAUCCCGCAACUAUCCUUCCAACAUUGUACCCAUCCC_AUCUCA .((.((((((((.((((((..............)))))).))..(((((....)).)))..((((((.((((....)).)).)))))).......)))))).))................ (-28.04 = -27.54 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:37 2006