Locus 8661

Sequence ID 3R_DroMel_CAF1
Location 23,152,488 – 23,152,604
Length 116
Max. P 0.571600
window13908

overview

Window 8

Location 23,152,488 – 23,152,604
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.07
Mean single sequence MFE -39.10
Consensus MFE -32.88
Energy contribution -33.50
Covariance contribution 0.62
Combinations/Pair 1.03
Mean z-score -1.60
Structure conservation index 0.84
SVM decision value 0.08
SVM RNA-class probability 0.571600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23152488 116 - 27905053
GAAUAUUUCUGGUGAGACUACGGCGCAUUUCUCAGCAGGGUCGCUGGAGGG----AAGCGACCCGCAAGCCCCCGACCCGUUUGUCAUUGGCAACUUUUUAAUUAAAAGUUUCAUCCGAG
.......((.(((((((((...((((........)).((((((((......----.))))))))))..(((...(((......)))...)))...............))))))))).)). ( -38.90)
>DroSec_CAF1 3335 116 - 1
GAAUAUUUCUGGUGAGACUACGGCGCAUUUCCCAGCAGGGUCGCUGGAGGG----AAGCGACCCGCAAGCCCCCGACCCGUUUGUCAUUGGCAACUUUUUAAUUAAAAGUUUCAUCCGAG
.......((.(((((((((...((((........)).((((((((......----.))))))))))..(((...(((......)))...)))...............))))))))).)). ( -38.90)
>DroSim_CAF1 7786 116 - 1
GAAUAUUUCUGGUGAGACUACGGCGCAUUUCUCAGCAGGGUCGCUGGAGGG----AAGCGACCCGCAAGCCCCCGACCCGUUUGUCAUUGGCAACUUUUUAAUUAAAAGUUUCAUCCGAG
.......((.(((((((((...((((........)).((((((((......----.))))))))))..(((...(((......)))...)))...............))))))))).)). ( -38.90)
>DroYak_CAF1 7816 119 - 1
GAAUAUUUCUGGUGAGACUACGGCGCAUUUCUCAGCAGGGGAGAGGGAGGUGGGUAUCCGACCCGCAAACC-CCGACCCGUUUGUCAUUGGCAACUUUUUAAUUAAAAGUUUCAUCCGAG
.......((.(((((((((..(((((........)).(((..(.(((..((((((.....))))))...))-))..)))....)))...(....)............))))))))).)). ( -39.70)
>consensus
GAAUAUUUCUGGUGAGACUACGGCGCAUUUCUCAGCAGGGUCGCUGGAGGG____AAGCGACCCGCAAGCCCCCGACCCGUUUGUCAUUGGCAACUUUUUAAUUAAAAGUUUCAUCCGAG
.......((.(((((((((...((((........)).((((((((...........))))))))))..(((...(((......)))...)))...............))))))))).)). (-32.88 = -33.50 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:34 2006