Locus 8660

Sequence ID 3R_DroMel_CAF1
Location 23,151,461 – 23,151,581
Length 120
Max. P 0.639071
window13907

overview

Window 7

Location 23,151,461 – 23,151,581
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -35.77
Consensus MFE -34.84
Energy contribution -34.90
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.97
SVM decision value 0.22
SVM RNA-class probability 0.639071
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23151461 120 - 27905053
GCGUCUAAUCGCCGCCGGAUGUCCGCAUAGAAAUUUGCUUUCAUUGUUUUUGUUCCAGCAGGCGGAUUCUCGUUAUAUUUGCCUGUUUUUCGAACGGUGGAUCCCCGAUUCUGUCGCCUA
(((.(.(((((((((((((((...(((.(....).)))...))))...((((....(((((((((((.........)))))))))))...)))))))))).....)))))..).)))... ( -37.20)
>DroSec_CAF1 2298 120 - 1
GCGUCUAAUCGCCGCCGGAUGUCCGCAUAGAAAUUUGCUUUCAUUGUUUUUGUUCCAGCAGGCGGACUCUCGUUAUAUUUGCCUGUUUUUCGGAUGGUGGAUUCCCGAUUCUGUCGCCUA
(((.(.(((((((((((((((...(((.(....).)))...))))........(((((((((((((...........))))))))))....))))))))).....)))))..).)))... ( -33.80)
>DroSim_CAF1 6757 120 - 1
GCGUCUAAUCGCCGCCGGAUGUCCGCAUAGAAAUUUGCUUUCAUUGUUUUUGUUCCAGCAGGCGGACUCUCGUUAUAUUUGCCUGUUUUUCGGAUGGUGGAUCCCCGAUUCUGUCGCCUA
(((.(.(((((((((((((((...(((.(....).)))...))))........(((((((((((((...........))))))))))....))))))))).....)))))..).)))... ( -33.80)
>DroYak_CAF1 6778 119 - 1
GCGUCUAAUCGCCGCCGGAUGUCCGCAUAGAAAUUUGCUUUCAUUGUUUUUGUUCCAGCAGGCGGAUUCUCGUUAUAUUUGCCUGUUUUUCGGACGGUGGAUUC-CGAUUCUGUCGCCUA
(((.(.(((((((((((((((...(((.(....).)))...))))........((((((((((((((.........)))))))))))....)))))))))....-)))))..).)))... ( -38.30)
>consensus
GCGUCUAAUCGCCGCCGGAUGUCCGCAUAGAAAUUUGCUUUCAUUGUUUUUGUUCCAGCAGGCGGACUCUCGUUAUAUUUGCCUGUUUUUCGGACGGUGGAUCCCCGAUUCUGUCGCCUA
(((.(.(((((((((((((((...(((.(....).)))...))))...((((....(((((((((((.........)))))))))))...)))))))))).....)))))..).)))... (-34.84 = -34.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:33 2006