Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,150,190 – 23,150,310 |
Length | 120 |
Max. P | 0.500000 |
Location | 23,150,190 – 23,150,310 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -30.20 |
Energy contribution | -30.95 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.91 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23150190 120 - 27905053 GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGUGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU ......((((.(((((..(((.....)))..((((.(((..........(((....))).((((((((..(((((.....))))).....))))))))))))))).)))))))))..... ( -34.10) >DroSec_CAF1 1079 120 - 1 GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGAGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU ......((((.(((((...........(((....)))(((.........(((....))).((((((((..(((((.....))))).....))))))))....))).)))))))))..... ( -34.00) >DroSim_CAF1 5485 120 - 1 GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGAGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU ......((((.(((((...........(((....)))(((.........(((....))).((((((((..(((((.....))))).....))))))))....))).)))))))))..... ( -34.00) >DroYak_CAF1 5524 120 - 1 GAUCGAGGCUUGGCAUAAAUUCAAAAAGCACGACUACGAGUACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCACUGCCGGCCACCGU ......((((.((((...........((.....))..((((........(((....))).((((((((..(((((.....))))).....))))))))...))))..))))))))..... ( -30.30) >consensus GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGAGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU ......((((.(((((...........(((....)))(((.........(((....))).((((((((..(((((.....))))).....))))))))....))).)))))))))..... (-30.20 = -30.95 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:30 2006