Locus 8655

Sequence ID 3R_DroMel_CAF1
Location 23,147,817 – 23,147,937
Length 120
Max. P 0.663466
window13899

overview

Window 9

Location 23,147,817 – 23,147,937
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.78
Mean single sequence MFE -33.12
Consensus MFE -23.80
Energy contribution -22.88
Covariance contribution -0.91
Combinations/Pair 1.32
Mean z-score -0.94
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.663466
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23147817 120 + 27905053
CAUUCCCGGUAUUUCAUCCCUGUUUUAUAAUGGCAACUCACCCGCAGGUCAUCGCAUGCCAUCAUUUUGGUCCAUUUAUCUGGCUUAAGGCGCAUUGUGGUCGUUGUGUAGGCGGCCACC
.....(((((((......(((((........(....)......))))).......)))))......((((.(((......))).))))))......(((((((((.....))))))))). ( -27.76)
>DroPse_CAF1 2531 96 + 1
------------------------GUAAAAUGUACGCUCACCCGCAGCUCAUCGCUGGCCAUCAUUUUGGUCCAUUUAUCCGGUUUGAGGCGCAUUGUGGUCGUUGUGUAGGCGGCCACA
------------------------....((((..(.((((.(((((((.....))))((((......)))).........)))..)))))..))))(((((((((.....))))))))). ( -33.80)
>DroSim_CAF1 3157 119 + 1
-AUUCCCGUUAUUUCACCCCUGUGUUAUAAUGGCAACUCACUCGCAGGUCAUCGCAGGCCAUCAUUUUGGUCCAUUUAUCCGGCUUGAGGCGCAUUGUGGUCGUUGUGUAGGCGGCCACC
-.....((((((..(((....)))..))))))((..((((...((.((........(((((......))))).......)).)).))))..))...(((((((((.....))))))))). ( -36.76)
>DroWil_CAF1 3080 96 + 1
------------------------GGAUGAUGGUUACUCACACGAAACUCAUCGUUGGCCAUCAUUUUACCCCAUUUAUCUGGUUUGAGGCGCAUUGUGGUUAUUGUAUAGGUGGCCACA
------------------------.(((((((((((.....((((......)))))))))))))))(((..(((......)))..))).......((((((((((.....)))))))))) ( -27.30)
>DroYak_CAF1 3139 120 + 1
GAUUCCGAGUAUCUUCCCCCUGUGCAACGGUGGCCACUCACCCGCAGCUCAUCGCUGGCCAUCAUUUUGGUCCACUUAUCCGGCUUGAGGCGCAUCGUGGUCGUUGUGUAGGCGGCCACC
................((((((..(((((...(((((.......((((.....))))(((.(((..((((.........))))..)))))).....))))))))))..)))).))..... ( -39.30)
>DroPer_CAF1 2567 96 + 1
------------------------GUAAAAUGUACGCUCACCCGCAGCUCAUCGCUGGCCAUCAUUUUGGUCCAUUUAUCCGGUUUGAGGCGCAUUGUGGUCGUUGUGUAGGCGGCCACA
------------------------....((((..(.((((.(((((((.....))))((((......)))).........)))..)))))..))))(((((((((.....))))))))). ( -33.80)
>consensus
________________________GUAUAAUGGCCACUCACCCGCAGCUCAUCGCUGGCCAUCAUUUUGGUCCAUUUAUCCGGCUUGAGGCGCAUUGUGGUCGUUGUGUAGGCGGCCACA
............................((((...........((........))..(((.(((..((((.........))))..)))))).))))(((((((((.....))))))))). (-23.80 = -22.88 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:26 2006