| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,146,716 – 23,146,829 |
| Length | 113 |
| Max. P | 0.835287 |
| Location | 23,146,716 – 23,146,829 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.82 |
| Mean single sequence MFE | -36.02 |
| Consensus MFE | -29.17 |
| Energy contribution | -29.53 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23146716 113 + 27905053 CCUUGACUCACGUGGGCAAACACUUCCUCGACGAUUGUUGGCGAAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUUUUGCCCUUAAUCUGUUG-GGAUAACAAUAAAGUAUA------ ..(((......(((......))).(((.(((((((((..(((((((((((((((((((....))).)).))))))))))))))..))))).))))-)))...))).........------ ( -33.60) >DroVir_CAF1 2712 114 + 1 CCCCGGUUCACGUGAGCAGACACUUCCUCGACGAUUGUUGGCGAAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUUUUGCCCUUAAUCUGUGGGGGAUAACAAUAAAGUAUA------ .....((((....)))).......(((((.(((((((..(((((((((((((((((((....))).)).))))))))))))))..))))).)).)))))...............------ ( -36.40) >DroGri_CAF1 2601 114 + 1 CCCCGGUCGACGUGGGCCGACAUUUCCUCGACGAUUGUUGGCGAAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUUUUGCCCUUAAUCUGUGGAGGAUAACAAUAAAGUAUA------ ...(((((......))))).....(((((.(((((((..(((((((((((((((((((....))).)).))))))))))))))..))))).)).)))))...............------ ( -41.20) >DroWil_CAF1 2166 113 + 1 CCUCGGUCCACGUGCGCAAACACUUCCUCGACGAUUGUUGGCGAAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUUUUGCCCUUAAUCUGUGG-GGAUAACAAUAAAGUAUA------ ...........((((.........((((((..(((((..(((((((((((((((((((....))).)).))))))))))))))..)))))..)))-)))..........)))).------ ( -33.31) >DroMoj_CAF1 2601 114 + 1 CCCCGGUUCACGUGGGCAGACACAUCCUCGACGACUGUUGGCGCAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUCUUGCCCUUAAUCUGUGGGGGAUAACAAUAAAGUAUA------ (((((.....)).))).......((((((.((((.((..((((..(((((((((((((....))).)).))))))))..))))..)).)).)).))))))..............------ ( -31.20) >DroAna_CAF1 1729 119 + 1 CCUUGGCUCACGUGGGCAAACACUUCCUCGACGAUUGUUGGCGAAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUUUUGCCCUUAAUCUGUGG-GGAUAGCAAUAAAGUAUAGGCCAA ...(((((.(((((......))).((((((..(((((..(((((((((((((((((((....))).)).))))))))))))))..)))))..)))-)))..........))...))))). ( -40.40) >consensus CCCCGGUUCACGUGGGCAAACACUUCCUCGACGAUUGUUGGCGAAACUAAUAACGAUAAAAUUGUGCGAUUGUUGGUUUUGCCCUUAAUCUGUGG_GGAUAACAAUAAAGUAUA______ .........(((((......))).(((.(.(((((((..(((((((((((((((((((....))).)).))))))))))))))..))))).)).).)))..........))......... (-29.17 = -29.53 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:25 2006