Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,144,154 – 23,144,269 |
Length | 115 |
Max. P | 0.532026 |
Location | 23,144,154 – 23,144,269 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -44.85 |
Consensus MFE | -32.97 |
Energy contribution | -32.37 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.33 |
Mean z-score | -0.97 |
Structure conservation index | 0.74 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23144154 115 - 27905053 AUGGAGCAGCUGGAGGAUAGUGUGGGGGAGGUCCUGCUGGGCUACGAAAUACGUGGCUUGGCCGCUUUACCUUUGGCCAACAACUUUCCACCGAUUGCGAAUGCCAUGAUGUGGC .....((((.(((.(((.(((.(((.((((((.(.((..(((((((.....)))))))..)).)....))))))..)))...))).))).))).))))....(((((...))))) ( -44.20) >DroPse_CAF1 1178 115 - 1 CUGCAGCAGCUGGAGGGGAGUGUGGCCGAGGUGCUGCUCGGCUACGAGAUUCGUGGCCUGGCUGCCCUCCCAAUGCCCUUUAAUUUCCCCCCCAUUGCGGGGGCCAUGAUGUGGC (..((.((..(((((((.(...(((..((((.((.(((.(((((((.....))))))).))).))))))))).).)))))))......(((((.....)))))...)).))..). ( -52.90) >DroEre_CAF1 1187 115 - 1 AUGGAGCAGCUGGAGAACAGUGUGGGGGAGGUGCUGCUGGGCCAUGAGAUUCGCGGCUUGGCUGCUUUACCUUUGGCCAACAACUUUCCACCCAUUGCAAAUGCCAUGAUGUGGC .....(((((((.....))))(((((((((((((.((..((((.((.....)).))))..)).))...))).(((.....)))...))).))))))))....(((((...))))) ( -41.00) >DroWil_CAF1 991 115 - 1 CUGAUGCAACUGGAGCAGAGUGUGGGAGAAGUUCUUUUGGGCUAUGACUUGCGUGGUUUGCCAGCUGUGCCCUUGCCAUUCAAUUUUCCUCCCAUUGCCGGGGCCAUGAUGUGGU (((..((((..((((.((((((((((((.....)))..((((.((..((.(((.....))).))..))))))...))))...))))).))))..))))))).(((((...))))) ( -31.50) >DroYak_CAF1 1197 115 - 1 AUGGAGCAGCUGGAGGAGAGUGUGGCGGAGUCGUUGCUGGGCUACGAAAUUCGCGGCUUGGCUGCCUUACCUUUGGCCAACAACUUUCCGCCGAUUGCAAAUGCCAUGAUGUGGC .....((((.(((.(((((((.((((.(((..((.((..(((..((.....))..)))..)).))......))).))))...))))))).))).))))....(((((...))))) ( -46.10) >DroPer_CAF1 1149 115 - 1 CUGCAGCAGCUGGAGGGGAGUGUGGCCGAGGUGCUGCUCGGCUACGAGAUUCGUGGCCUGGCUGCCCUGCCAAUGCCCUUUAAUUUCCCCCCCAUUGCGGGGGCCAUGAUGUGGC (..((.((..(((((((.(...((((..(((.((.(((.(((((((.....))))))).))).))))))))).).)))))))......(((((.....)))))...)).))..). ( -53.40) >consensus AUGGAGCAGCUGGAGGAGAGUGUGGCGGAGGUGCUGCUGGGCUACGAGAUUCGUGGCUUGGCUGCCUUACCUUUGCCCAACAACUUUCCACCCAUUGCGAAGGCCAUGAUGUGGC .....((((..((.(((((((..((....(((...(((((((((((.....))))))))))).)))...))..((.....))))))))).))..))))....(((((...))))) (-32.97 = -32.37 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:22 2006