Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,917,734 – 2,917,845 |
Length | 111 |
Max. P | 0.952765 |
Location | 2,917,734 – 2,917,845 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 84.23 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -21.39 |
Energy contribution | -21.83 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.62 |
Structure conservation index | 0.81 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2917734 111 - 27905053 UAUUUAUAGUAGAGCUGGAAAACCUCGAUGUUUUUCAGUUU-UUCAAUACAUUGAGCGUUUUGGAAAGCAAUCGAUGUUUUCUCCGCGCUAACACAGACACAUUAAUAGAGC ..(((((.(.(((((((((((((......))))))))))))-).).........(((((...((((((((.....))))))))..)))))...............))))).. ( -27.40) >DroSec_CAF1 7985 101 - 1 -----------CAGCUGGAAAACUUCGAUGUUUUUCAGUUUUUUUAAAACAUUGAGAGUUUUCGAAAGCAAUCGAUGUUUUCUCCGCACUAACACAGACACUUUAAUACAGC -----------..(((((((((((((((((((((...........)))))))))).)))))))(((((((.....)))))))..........................)))) ( -26.20) >DroSim_CAF1 8949 107 - 1 UAUUUAUAGUAGAGCUGGAAAACUUCGAUGUUUUUCAGUUUUUUCAAAACAUUGAGAGUUUUCGAAAGCAAUCGAUGUUUCCUCCGCACUAACACAGACACUUUAAU----- ......(((((((((((((((((......)))))))))))))....(((((((((..((((....))))..))))))))).......))))................----- ( -25.50) >consensus UAUUUAUAGUAGAGCUGGAAAACUUCGAUGUUUUUCAGUUUUUUCAAAACAUUGAGAGUUUUCGAAAGCAAUCGAUGUUUUCUCCGCACUAACACAGACACUUUAAUA_AGC .............((.(((((((.(((((((((((.((..(((((((....)))))))..)).)))))).))))).)))))).).))......................... (-21.39 = -21.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:07 2006