Locus 8649

Sequence ID	3R_DroMel_CAF1
Location	23,136,121 – 23,136,229
Length	108
Max. P	0.924727

overview

Window 0

Location	23,136,121 – 23,136,229
Length	108
Sequences	6
Columns	108
Reading direction	forward
Mean pairwise identity	79.76
Mean single sequence MFE	-29.88
Consensus MFE	-19.51
Energy contribution	-21.73
Covariance contribution	2.23
Combinations/Pair	1.16
Mean z-score	-2.30
Structure conservation index	0.65
SVM decision value	1.16
SVM RNA-class probability	0.924727
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23136121 108 + 27905053
AGCCGGGCUAUGGACUUUACAUUUGUAGCGGAUUUCCGCUGCUAAAUCCAUUAACGCCCCCUGGCAGGCGUUGAAAAGGUUUAUAUUUAAUUCAGGACUCGUUAGAAA
...((((((.((((..........(((((((....)))))))((((((..((((((((........))))))))...)))))).......)))))).))))....... ( -31.50)
>DroPse_CAF1 14517 90 + 1
AGCUG-ACUAUGGACUUUUCAUGUGUAGCGGAUUUCCGCUGCUAAACCCAUUAACGCC-CCUCUCCG----CCAGAAGAUUUGUAUUUACUUCAAA------------
.((..-...((((((.......))(((((((....))))))).....))))....)).-........----...((((...........))))...------------ ( -17.90)
>DroEre_CAF1 13555 108 + 1
AGCCGAGCCAUGGACUUUACAUUUGUAGCGGAUUUCCGCUGCUAAAUCCAUUAACGCCCCCUGGCAGGCGUUGAAAAGGUUUAUAUUUAAUUCAGGGCUCGUUAGAAA
...((((((.((((..........(((((((....)))))))((((((..((((((((........))))))))...)))))).......)))).))))))....... ( -39.50)
>DroYak_CAF1 15327 108 + 1
AGCCGAGCUAUGGACUUUACAUUUGUAGCGGAUUUCCGCUGCUAAAUCCAUUAACGCCCCCUGGCAGGCGUUGAAAAGGUUUAUAUUUAAUUCAGGGCUCGUUAGAAG
...((((((.((((..........(((((((....)))))))((((((..((((((((........))))))))...)))))).......)))).))))))....... ( -37.70)
>DroAna_CAF1 13930 107 + 1
AGCCA-ACUAUGGUCUAUACAUUUGUAGCGGAUUUCCGCUGAUAAAUCCAUUAACGCCCCGUGGCAGGCGUUGAUGAGGUUUAUAUUUAAUUCAGCACUCGUUAGAAA
..(((-....)))((((.((.....((((((....))))))(((((((((((((((((........)))))))))).)))))))................)))))).. ( -33.40)
>DroPer_CAF1 14395 91 + 1
AGCCG-ACUAUGGACUUUUCAUGUGUAGCGGAUUUCCGCUGCUAAACCCAUUAACGCCCCCUCUCCG----CAAGAAGAUUCGUAUUUACUUCAAA------------
.((..-...((((((.......))(((((((....))))))).....))))....))....(((.(.----...).))).................------------ ( -19.30)
>consensus
AGCCG_ACUAUGGACUUUACAUUUGUAGCGGAUUUCCGCUGCUAAAUCCAUUAACGCCCCCUGGCAGGCGUUGAAAAGGUUUAUAUUUAAUUCAGG_CUCGUUAGAAA
........((((((((((......(((((((....)))))))........((((((((........)))))))).))))))))))....................... (-19.51 = -21.73 +   2.23)

alignment

secondary structure

dotplot

Window 1

Location	23,136,121 – 23,136,229
Length	108
Sequences	6
Columns	108
Reading direction	reverse
Mean pairwise identity	79.76
Mean single sequence MFE	-28.76
Consensus MFE	-15.97
Energy contribution	-16.75
Covariance contribution	0.78
Combinations/Pair	1.22
Mean z-score	-1.84
Structure conservation index	0.56
SVM decision value	0.09
SVM RNA-class probability	0.576935
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23136121 108 - 27905053
UUUCUAACGAGUCCUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCCCGGCU
..((....))((..((((...............))))..))..(((...((((....((((((((.(((((((....))))......))).)))))))).))))))). ( -28.36)
>DroPse_CAF1 14517 90 - 1
------------UUUGAAGUAAAUACAAAUCUUCUGG----CGGAGAGG-GGCGUUAAUGGGUUUAGCAGCGGAAAUCCGCUACACAUGAAAAGUCCAUAGU-CAGCU
------------.....................((((----(......(-((((((((.....)))))(((((....)))))...........))))...))-))).. ( -22.60)
>DroEre_CAF1 13555 108 - 1
UUUCUAACGAGCCCUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUGGCUCGGCU
.......((((((.......................(((((((......))))))).((((((((.(((((((....))))......))).))))))))))))))... ( -37.20)
>DroYak_CAF1 15327 108 - 1
CUUCUAACGAGCCCUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCUCGGCU
.......(((((........................(((((((......))))))).((((((((.(((((((....))))......))).)))))))).)))))... ( -34.10)
>DroAna_CAF1 13930 107 - 1
UUUCUAACGAGUGCUGAAUUAAAUAUAAACCUCAUCAACGCCUGCCACGGGGCGUUAAUGGAUUUAUCAGCGGAAAUCCGCUACAAAUGUAUAGACCAUAGU-UGGCU
..(((((((..((...........(((((.(.(((.(((((((......))))))).)))).))))).(((((....))))).))..))).))))(((....-))).. ( -26.70)
>DroPer_CAF1 14395 91 - 1
------------UUUGAAGUAAAUACGAAUCUUCUUG----CGGAGAGGGGGCGUUAAUGGGUUUAGCAGCGGAAAUCCGCUACACAUGAAAAGUCCAUAGU-CGGCU
------------...((((...........))))..(----(.((....(((((((((.....)))))(((((....)))))...........))))....)-).)). ( -23.60)
>consensus
UUUCUAACGAG_CCUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGC_CGGCU
.............(((....................((((((........)))))).((((((((..((((((....))))......))..))))))))....))).. (-15.97 = -16.75 +   0.78)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:18 2006