Locus 8647

Sequence ID 3R_DroMel_CAF1
Location 23,125,841 – 23,125,961
Length 120
Max. P 0.591565
window13888

overview

Window 8

Location 23,125,841 – 23,125,961
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.29
Mean single sequence MFE -30.91
Consensus MFE -23.42
Energy contribution -23.82
Covariance contribution 0.40
Combinations/Pair 1.06
Mean z-score -1.77
Structure conservation index 0.76
SVM decision value 0.12
SVM RNA-class probability 0.591565
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23125841 120 + 27905053
GACCCCAAAACGGUUGCGUUUUCAUUAGUUUCCCCAUUCAGGUGCCAUUAAAUCGUAACGUUUUUUGGCACAAGUUUGGUGAUUACUGAUAAUUUUGGCUCUUUGAAUCGGCAAAGAUAA
....((((((((....)))....((((((.((.(((..(..((((((..((((......))))..))))))..)..))).))..))))))...))))).((((((......))))))... ( -31.30)
>DroSec_CAF1 3870 119 + 1
GACCCCAAAACGGUUGCGUUUUCAUUAGUUUCGCCAUUCAGGUGCCAUUAAAUCGUAACGUUU-UUGGCACAAGUUUGGUGAUUACUGAUAAUUUUGGCCCUUUGAAUCGGCAAAGAUAA
......((((((....)))))).((((((.((((((..(..((((((..((((......))))-.))))))..)..))))))..)))))).(((((.(((.........))).))))).. ( -32.70)
>DroSim_CAF1 3869 119 + 1
GACCCCAAAACGGUUGCGUUUUCAUUAGUUUCGCCAUUCAGGUGCCAUUAAAUCGUAACGUUU-UUGGCACAAGUUUGGUGAUUACUGAUAAUUUUGGCCCUUUGAAUCGGCAAAGAUAA
......((((((....)))))).((((((.((((((..(..((((((..((((......))))-.))))))..)..))))))..)))))).(((((.(((.........))).))))).. ( -32.70)
>DroEre_CAF1 3764 117 + 1
GACCCCAAAACGUUUGCGUUUUCAUUAGUCUC-CCAUUCAGGUGCCAUUAAAUCGUAACGUUU-UUGGCACAACUUUGGUGGUUACUGAUAAUU-UGGCUCUUUGCAUCAGCUAAGAUAA
....((((((((....)))....(((((((..-(((.....((((((..((((......))))-.)))))).....)))..)..))))))..))-))).((((.((....)).))))... ( -27.60)
>DroYak_CAF1 3883 118 + 1
GACCCCGAAACGAUUGCCUUUUCAUUAGUCUCCCCAUUCAGGUGCCAUUAAAUCGUAACGCUU-UUGGCACAAGUUUGGUGGUUACUGAUAAUU-UGGCUCUUUGAAUAAGCCAAGAUAA
......((((.(.....).))))((((((..(((((..(..((((((................-.))))))..)..))).))..))))))..((-(((((.........))))))).... ( -30.23)
>consensus
GACCCCAAAACGGUUGCGUUUUCAUUAGUUUCCCCAUUCAGGUGCCAUUAAAUCGUAACGUUU_UUGGCACAAGUUUGGUGAUUACUGAUAAUUUUGGCUCUUUGAAUCGGCAAAGAUAA
....((((((((....)))))).((((((.((.(((.....((((((..((((......))))..)))))).....))).))..))))))......))..(((((......))))).... (-23.42 = -23.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:15 2006