Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,121,279 – 23,121,399 |
Length | 120 |
Max. P | 0.639810 |
Location | 23,121,279 – 23,121,399 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.72 |
Mean single sequence MFE | -49.39 |
Consensus MFE | -43.13 |
Energy contribution | -42.80 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.32 |
Mean z-score | -1.53 |
Structure conservation index | 0.87 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23121279 120 + 27905053 CGUCGAUCAUGAUUUUGACCAGCUCCUCGCGCGGUGCUCCGCAAUGGGAACUCAGUUCCGACUCCCGCGGCUGCAGCUCGAAAAUGGUGCGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA ............(((((((((((.((......)).)).(((((...(((((...)))))...(((.((((((((.((.((.......)).)).))))))))..))))))))))))))))) ( -47.30) >DroGri_CAF1 1143 120 + 1 CGUCAAUCAUGAUCUUCACCAGCUCUUCGCGUGGUGCCCCACAAUGGGUGCUCAGCUCGGACUCUCGCGGCUGCAGCUCAAAGAUGGUGCGUAGCAGCUGCUCCGAGGCGCUUGUGAGGA ............(((((((.(((.((((((..((..(((......)))..))..))..(((.....((((((((.(((((....))).))...))))))))))))))).))).))))))) ( -50.20) >DroSec_CAF1 1024 120 + 1 CGUCGAUCAUGAUCUUGACCAGCUCCUCGCGCGGUGCUCCGCAAUGGGAGCUCAGUUCCGACUCCCGCGGCUGCAGCUCGAAAAUGGUGCGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA ............(((((((((((((((...((((....))))...))))))......(((..(((.((((((((.((.((.......)).)).))))))))..)))..)))))))))))) ( -54.70) >DroEre_CAF1 4057 120 + 1 CGUCGAUCAUGAUCUUGACCAGCUCCUCACGCGGUGCUCCGCAAUGGGAACUCAGUUCCGAUUCCCGCGGUUGCAGCUCAAAAAUGGUACGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA ............(((((((((((.((......)).)).(((((((.(((((...))))).))(((.((((((((.((.............)).))))))))..))))))))))))))))) ( -46.82) >DroYak_CAF1 1139 120 + 1 CAUCGAUCAUGAUCUUGACCAGCUCCUCGCGCGGUGCACCGCAAUGGGAGCUCAGUUCGGAUUCCCGCGGCUGCAGCUCGAAAAUGGUGCGCAGCAGCUGCUCGGAAGCGGUGGUCAGGA ............(((((((((((((((...((((....))))...)))))).....(((..((((.((((((((.((.((.......)).)).))))))))..)))).)))))))))))) ( -53.60) >DroAna_CAF1 1905 120 + 1 CAUCAAUCAUAAUUUUCACCAGCUCCUCGCGAGGCGCUCCGCAGUGUGAGCUCAGCUCCGAUUCCCGCGGCUGAAGCUCAAAGAUGGUGCGCAGAAGUUGUUCGGAGGCAGUGGUCAGAA ............((((.((((.((((((.((((((((.(((.....(((((((((((.((.....)).))))).))))))....))).))))........)))))))).)))))).)))) ( -43.70) >consensus CGUCGAUCAUGAUCUUGACCAGCUCCUCGCGCGGUGCUCCGCAAUGGGAGCUCAGUUCCGACUCCCGCGGCUGCAGCUCAAAAAUGGUGCGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA ............(((((((((((((((...((((....))))...))))))...(((((((.....((((((((.((.((.......)).)).))))))))))))).))..))))))))) (-43.13 = -42.80 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:14 2006