| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,114,193 – 23,114,292 |
| Length | 99 |
| Max. P | 0.706615 |
| Location | 23,114,193 – 23,114,292 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.87 |
| Mean single sequence MFE | -29.36 |
| Consensus MFE | -17.41 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.706615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23114193 99 + 27905053 UCAACUGCGACGUUUUGG--AAUUCCCAAAACAAAAACACUAGCAGCGGUGUGACUGUCGCAAGGUAGCGCGAAAAG--CCUUCGGUAUCUGAUGGUCACAUU ....((((...(((((((--.....)))))))..........)))).((((((((((((...(((((.(.((((...--..)))))))))))))))))))))) ( -29.42) >DroSec_CAF1 4573 99 + 1 UCAACUGCGACGUUUUGG--AAUUCCCAAAACAAAAACACCAGCAGCGGUGUGACCGUCGCGAGGUAGCGCGAAAAG--CCUUCGUUAUAUGACGGUCACAUG ....((((...(((((((--.....)))))))..........))))..(((((((((((((((((..((.......)--))))))).....))))))))))). ( -35.72) >DroSim_CAF1 697 99 + 1 UCAACUGCGACGUUUUGG--AAUUCCCAAAACAAAAACACCAGCAGCGGUGUGACCGUCGCGAGGUAGCGCGAAAAG--CCUUCGUUAUAUGAUGGUCAGAUU ...........(((((((--.....)))))))....(((((......)))))(((((((((((((..((.......)--))))))).....)))))))..... ( -31.80) >DroEre_CAF1 983 95 + 1 UCAACUGCGACGUUUUGG--AAUUCCCAAAACAAAAACACCAGCGAUAGUGUGACCGUCGUGGGGUAUCGAGAAAUG--CCGCAGCUAUCUA----UCAGCCU ....(..(((((((((((--.....)))))))....((((........))))....))))..)(((....(((...(--(....))..))).----...))). ( -26.60) >DroYak_CAF1 975 99 + 1 UCAACUGCGACGUUUUGG--AAUUCCCAAAACAAAAACACCAGCAACGGUGUGACUGUCGUGGGGUGUCGAGAAAAU--CCUCAGCUAUCUGAUGGUCACACU ....(..(((((((((((--.....)))))))....(((((......)))))....))))..)(((((.((......--((((((....)))).))))))))) ( -32.30) >DroAna_CAF1 1038 102 + 1 UCAACUACGACGUUGUGGAGAAUUCCCAAAACAAAAACACCAGCUGUUAUGUGGCCGUCCAAGUGU-GGGCUAAAAAUACGAUUGUCAUUAUUUGGUCACACU ...........(((.(((.(....)))).)))...((((.....)))).((((((((((((....)-)))).........(.....).......))))))).. ( -20.30) >consensus UCAACUGCGACGUUUUGG__AAUUCCCAAAACAAAAACACCAGCAGCGGUGUGACCGUCGCGAGGUAGCGCGAAAAG__CCUUCGUUAUCUGAUGGUCACACU .....(((((((((((((.......)))))))....(((((......)))))....))))))......................................... (-17.41 = -17.93 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:11 2006