Locus 8641

Sequence ID 3R_DroMel_CAF1
Location 23,107,510 – 23,107,611
Length 101
Max. P 0.811364
window13877

overview

Window 7

Location 23,107,510 – 23,107,611
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.36
Mean single sequence MFE -30.95
Consensus MFE -18.61
Energy contribution -16.23
Covariance contribution -2.38
Combinations/Pair 1.43
Mean z-score -1.60
Structure conservation index 0.60
SVM decision value 0.65
SVM RNA-class probability 0.811364
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23107510 101 - 27905053
----GGGUUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAAA------UUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC---------GCUUGAAAAC
----((((((....))))))..........(((((((((.((((((.------...(((....(((((((((.....)))))))))))).....)))))).---------))))))))). ( -30.10)
>DroPse_CAF1 7394 104 - 1
----UGGAUUUUGUAGGCCCGUUCGUCGCUU--UCGAGUUUUGAAAUUCAGUAUCAGUAUUGAAAUCGUCGUUAGCGACGGUGGU-UGCUUCGAUUCCGCC---------GUUGGUUGCU
----.(((..(((.((((....((((((((.--.(((....(((..(((((((....))))))).))))))..))))))))....-.))))))).)))((.---------.......)). ( -29.20)
>DroSec_CAF1 10527 101 - 1
----GGGUUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUAAAAAA------UUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC---------GCUUGAAAAC
----((((((....))))))..........(((((((((((((((..------...(((....(((((((((.....)))))))))))).....)))))).---------))))))))). ( -29.00)
>DroYak_CAF1 10792 101 - 1
----GGGUUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAAA------UUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC---------GCUUGAAAAC
----((((((....))))))..........(((((((((.((((((.------...(((....(((((((((.....)))))))))))).....)))))).---------))))))))). ( -30.10)
>DroAna_CAF1 10781 113 - 1
GGUUCGGUUUUUGUAGGCCCGUUUGUCGGUUUU--GAGUUUUGAAAUC-CGUUUCACUAUUGGAAUCGUCGUUAACGGCGACGG---GUCUCAAAUUCGGCCAGCUCUCCACUUGGAAU-
(((.(((..((((.(((((((((....(((((.--.(....(((((..-..)))))...)..)))))((((....)))))))))---)))))))).)))))).....(((....)))..- ( -38.10)
>DroPer_CAF1 7368 104 - 1
----UGGAUUUUGUAGGCCCGUUCGUCGCUU--UCGAGUUUUGAAAUUCAGUAUCAGUAUUGAAAUCGUCGUUAGCGACGGUGGU-UGCUUCGAUUCCGCC---------GUUGGUUGCU
----.(((..(((.((((....((((((((.--.(((....(((..(((((((....))))))).))))))..))))))))....-.))))))).)))((.---------.......)). ( -29.20)
>consensus
____GGGUUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAAA______UCAGUAUUGAAAUCGUCGUUAACGGCGACGGU_UGCCUCAAUUUCGAC_________GCUUGAAAAC
.....((...(((.((((((((.(((((.((...((((((((((...............)))))))..)))..)))))))))))...)))))))..))...................... (-18.61 = -16.23 +  -2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:04 2006