| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,106,861 – 23,106,968 |
| Length | 107 |
| Max. P | 0.514483 |
| Location | 23,106,861 – 23,106,968 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 68.84 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -9.64 |
| Energy contribution | -11.17 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.33 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23106861 107 + 27905053 UUGGGGGUUGUUCGAAAAGCAGCUUUCAGAAUGACAUAUCACAU-------GAUGUGUGCUCUGCAUGGCGGAUUCUUCCUUGGCAGCCCCAAU-UAACAAACUAAUUCCGAACU ...((((((((.(((......(((..((((...(((((((....-------)))))))..))))...)))(((....))))))))))))))...-.................... ( -32.60) >DroSec_CAF1 9904 107 + 1 UUGGGGGUUGUUAGAAAAGCAGCUUUCAAAAUGACAUAUCACAU-------GAUGUGUGCUCUGCUAGGCGACUUCUUCCUUGGCAGCCCCAAU-UAACCAACUAAUUCCAAACU ((((((((((((.....))))))..........(((((((....-------)))))))...((((((((.((.....)))))))))))))))).-.................... ( -31.30) >DroSim_CAF1 11704 107 + 1 UUGGGGGUUGUUAGAAAAGCAGCUUUCAGAAUGACAUAUCACAU-------GAUGUGUGCUCUGCUAGGCGACUUCUUCCUUGGCAGACCCAAU-UAACCAACUAAUUCCAAACU .((..(((((((.....)))))))..))((((.(((((((....-------)))))))..(((((((((.((.....)))))))))))......-..........))))...... ( -32.10) >DroEre_CAF1 10154 100 + 1 UCGGGGGUAGUUCGAAAACUUGCUUUCAGAAUGAUAUAUCACUU-------GAUGU-------GAAAGGCAGAUUCCUUCUUAGCAGCCCCAAU-UAACCAAAUAAUUCCGAACU ((((((((((((....))))((((...((((...((((((....-------)))))-------)...((......)))))).)))))))))(((-((......))))).)))... ( -19.90) >DroYak_CAF1 10147 104 + 1 UUGG-GGUAGUUCAAAAAUCUGCUUUCAGAGUGUUAAAUCACUU-------GAAGUGUGC--UGAAAGGCAGAGUCUGUCUUAGCAGCCUAAAU-UAACCAACUAAUUCCGAACU ((((-(((((((.........(((((..(((((......)))))-------)))))..((--((.(((((((...)))))))..))))......-.....)))).)))))))... ( -26.40) >DroPer_CAF1 6602 106 + 1 UCACGGGGUCAUGGAAAA--------CAAAACGGGUUGUCAGACCUAUUGGACUGUGGGUCCUGUUGGGC-ACAUCUGGUUUGAAACCACGACUGUAUUGGAUUUAUUCGAUGCG ......((((.(((....--------((((.(((((((((.(((((((......)))))))......)))-).))))).))))...))).))))((((((((....)))))))). ( -32.00) >consensus UUGGGGGUUGUUCGAAAAGCAGCUUUCAGAAUGACAUAUCACAU_______GAUGUGUGCUCUGCAAGGCGAAUUCUUCCUUGGCAGCCCCAAU_UAACCAACUAAUUCCAAACU ...(((((((((...........................(((((........))))).(((......)))............)))))))))........................ ( -9.64 = -11.17 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:03 2006