Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,915,277 – 2,915,384 |
Length | 107 |
Max. P | 0.998897 |
Location | 2,915,277 – 2,915,384 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 72.05 |
Mean single sequence MFE | -32.56 |
Consensus MFE | -13.97 |
Energy contribution | -15.33 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.19 |
Mean z-score | -2.72 |
Structure conservation index | 0.43 |
SVM decision value | 3.27 |
SVM RNA-class probability | 0.998897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2915277 107 + 27905053 UACUUGUAAGUAUGUAGACACA-------UACAUACAUAAUCCGCCUGCUCCGUUUGCGC-CCAAUGCGGCAUUUUCAUGAAACAGACCGAAGAGGCAGCUGCUAUCGAAUUUCC ....((((.((((((....)))-------))).))))......((((..((.(((((.((-(......))).(((....))).))))).))..)))).................. ( -23.90) >DroVir_CAF1 5976 90 + 1 CGCG----------------AU-------GGCAAAAGUUAGCUUCUCCCUCCCUCUGCAAGCAAAUGCCGAAUUUUCGAGAAGCAGGCCAAC--AGCUGCAGCUAUCGAUUUUUC ..((----------------((-------(((........(((((((......((.(((......))).))......))))))).(((....--.)))...)))))))....... ( -26.60) >DroSec_CAF1 6079 107 + 1 UAUUUGCAUGUAUGUACACACA-------UACAUAUGUAAGCCGCCUUCUCCGUUUGCGC-CCAAUGCGGCAUUUUCAAGAAACAGACCGAGGAGGCGGCUGCUAUCGAAUUUCC .....((((((((((....)))-------))))).....((((((((((((.(((((.((-(......))).(((....))).))))).))))))))))))))............ ( -40.90) >DroSim_CAF1 6113 107 + 1 UAUUUGCAUGUAUGUACACACA-------UACAUAUGUAAGCCGCCUUCUCCGUUUGCGC-CCAAUGCGGCAUUUUCAAGAAACAGACCGAGGAGGCAGCUGCUAUCGAAUUUCC .....((((((((((....)))-------))))).....(((.((((((((.(((((.((-(......))).(((....))).))))).)))))))).)))))............ ( -34.80) >DroYak_CAF1 6024 112 + 1 UACGUUUAUGUGGGUAUAUA--AUCUACAUAUGUAUGUAAGCCGCCUUCUCCGUUUGCGC-CCAAUGCGGAAUUUUCAAGAAACAGACCGAGGAGGCAGCUGGUAUCGAAUUUCC (((((.(((((((((.....--)))))))))...)))))(((.((((((((.((((((((-.....)))((....))......))))).)))))))).))).............. ( -36.60) >consensus UACUUGCAUGUAUGUACACACA_______UACAUAUGUAAGCCGCCUUCUCCGUUUGCGC_CCAAUGCGGCAUUUUCAAGAAACAGACCGAGGAGGCAGCUGCUAUCGAAUUUCC .......................................(((.((((((((.(((((..........................))))).)))))))).))).............. (-13.97 = -15.33 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:06 2006