Locus 864

Sequence ID 3R_DroMel_CAF1
Location 2,915,277 – 2,915,384
Length 107
Max. P 0.998897
window1376

overview

Window 6

Location 2,915,277 – 2,915,384
Length 107
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 72.05
Mean single sequence MFE -32.56
Consensus MFE -13.97
Energy contribution -15.33
Covariance contribution 1.36
Combinations/Pair 1.19
Mean z-score -2.72
Structure conservation index 0.43
SVM decision value 3.27
SVM RNA-class probability 0.998897
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2915277 107 + 27905053
UACUUGUAAGUAUGUAGACACA-------UACAUACAUAAUCCGCCUGCUCCGUUUGCGC-CCAAUGCGGCAUUUUCAUGAAACAGACCGAAGAGGCAGCUGCUAUCGAAUUUCC
....((((.((((((....)))-------))).))))......((((..((.(((((.((-(......))).(((....))).))))).))..)))).................. ( -23.90)
>DroVir_CAF1 5976 90 + 1
CGCG----------------AU-------GGCAAAAGUUAGCUUCUCCCUCCCUCUGCAAGCAAAUGCCGAAUUUUCGAGAAGCAGGCCAAC--AGCUGCAGCUAUCGAUUUUUC
..((----------------((-------(((........(((((((......((.(((......))).))......))))))).(((....--.)))...)))))))....... ( -26.60)
>DroSec_CAF1 6079 107 + 1
UAUUUGCAUGUAUGUACACACA-------UACAUAUGUAAGCCGCCUUCUCCGUUUGCGC-CCAAUGCGGCAUUUUCAAGAAACAGACCGAGGAGGCGGCUGCUAUCGAAUUUCC
.....((((((((((....)))-------))))).....((((((((((((.(((((.((-(......))).(((....))).))))).))))))))))))))............ ( -40.90)
>DroSim_CAF1 6113 107 + 1
UAUUUGCAUGUAUGUACACACA-------UACAUAUGUAAGCCGCCUUCUCCGUUUGCGC-CCAAUGCGGCAUUUUCAAGAAACAGACCGAGGAGGCAGCUGCUAUCGAAUUUCC
.....((((((((((....)))-------))))).....(((.((((((((.(((((.((-(......))).(((....))).))))).)))))))).)))))............ ( -34.80)
>DroYak_CAF1 6024 112 + 1
UACGUUUAUGUGGGUAUAUA--AUCUACAUAUGUAUGUAAGCCGCCUUCUCCGUUUGCGC-CCAAUGCGGAAUUUUCAAGAAACAGACCGAGGAGGCAGCUGGUAUCGAAUUUCC
(((((.(((((((((.....--)))))))))...)))))(((.((((((((.((((((((-.....)))((....))......))))).)))))))).))).............. ( -36.60)
>consensus
UACUUGCAUGUAUGUACACACA_______UACAUAUGUAAGCCGCCUUCUCCGUUUGCGC_CCAAUGCGGCAUUUUCAAGAAACAGACCGAGGAGGCAGCUGCUAUCGAAUUUCC
.......................................(((.((((((((.(((((..........................))))).)))))))).))).............. (-13.97 = -15.33 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:06 2006