| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,100,823 – 23,100,920 |
| Length | 97 |
| Max. P | 0.787573 |
| Location | 23,100,823 – 23,100,920 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.88 |
| Mean single sequence MFE | -19.33 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.68 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23100823 97 - 27905053 AGGGGA---AGAUACAAAAUAGAAACUGCAAAUACAAAGGAAGGCCAACUAAAUGUUUGCGUUCCAUUAAUGGCCACUAAAAUUGGAAUUUCCUACUCAA ..((((---((...........................((((.((.(((.....))).)).))))........(((.......)))..))))))...... ( -18.20) >DroSec_CAF1 3935 97 - 1 AGGGGA---AGAUACAAAAUACAAACUGCAAAUACAAAGGAAGGCCAGCUAAAUGUUUGCGUCCCAUUAAUGGCCACUAAAAUUGGAAUUUCCCACUCAA .(((((---(....(((........((..........))...(((((....((((.........))))..))))).......)))...))))))...... ( -18.20) >DroSim_CAF1 3953 97 - 1 AGGGGA---AGAUACAAAAUACAAACUGCAAAUACAAAGGAAGGCCAGCUAAAUGUUUGCGUUCCAUUAAUGGCCACUAAAAUUGGAAUUUCCCACUCAA ..((((---((...........................((((.((.(((.....))).)).))))........(((.......)))..))))))...... ( -20.50) >DroEre_CAF1 3947 86 - 1 AGGGGA---AGA-----------GACUCCAAAUACAAAGGAAGGCCAGAUAAAUGUUUGCGUUCCAUUAAUGGGCACUAAAAUUGGAAUUUCCCACUCAA .(((((---(..-----------...(((((.......((((.((.((((....)))))).))))......(....).....))))).))))))...... ( -20.00) >DroYak_CAF1 3980 86 - 1 AGGGGA---AGA-----------GACUCCAAAUACAAAGGAAGGCCAGAUAAAUGUUUGCGUUCCAUUAAUGGCCACUAAAAUUGGAACUUCCCACUCAA ..((((---((.-----------...(((((......((...(((((....((((....)))).......))))).))....))))).))))))...... ( -22.00) >DroAna_CAF1 3744 78 - 1 AGGGGUGGGGGGUAUGA------GAAUCC-AAUACAAAGAAAUGUAAACUAAAAGUUUACUUUUCACU--------------UUAGCAUUUAAAAG-CCA .((.(((..((((....------..))))-..)))...((((.((((((.....)))))).))))...--------------..............-)). ( -17.10) >consensus AGGGGA___AGAUACAA______AACUCCAAAUACAAAGGAAGGCCAGCUAAAUGUUUGCGUUCCAUUAAUGGCCACUAAAAUUGGAAUUUCCCACUCAA .(((((................................((((.((.(((.....))).)).)))).(((((..........)))))...)))))...... (-10.30 = -10.68 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:59 2006