| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,099,512 – 23,099,619 |
| Length | 107 |
| Max. P | 0.595543 |
| Location | 23,099,512 – 23,099,619 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 87.98 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -25.59 |
| Energy contribution | -26.48 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23099512 107 - 27905053 G-UUUUC---ACUUACCCUGUGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCAUUGUUUAACAGGGACAUGGCUGGCAGUGUUCAGGGGUACU-CUUUAUUCUAUAAAACU .-.....---...((((((((((((....)))))).....(((((((((((((((.((((.....))))))))).)))))))))).))))))..-................. ( -33.70) >DroSec_CAF1 2616 107 - 1 A-UUUUC---ACUCACCCUGUGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCAUUGUUUAACAGGGACAUGGCUGGCAGUGUUCAAGGGUACU-CUUUAUUCUAUAAAACU .-.....---....(((((((((((....)))))).....(((((((((((((((.((((.....))))))))).)))))))))).)))))...-................. ( -32.70) >DroSim_CAF1 2629 107 - 1 A-UUUUC---ACUCACCCUGUGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCAUUGUUUAACAGGGACAUGGCUGGCAGUGUUCAGGGGUACU-CUUUAUUCUAUAAAACU .-.....---....(((((((((((....)))))).....(((((((((((((((.((((.....))))))))).)))))))))).)))))...-................. ( -32.70) >DroEre_CAF1 2644 107 - 1 G-AUUUC---ACUUACCCUGUGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCAUUAUUUAACAGGGACAUGACUGGCAGUGUUCAAGGGUACU-CUUUAUUCUUUUAAACU .-.....---...((((((((((((....)))))).....(((((((((((((((..............))))).)))))))))).))))))..-................. ( -30.24) >DroYak_CAF1 2670 107 - 1 G-AUUUU---ACUCACCCUGUGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCAUUGUUUAACAGGGACAUGGCUGGCAGUGUUCAAGGGUACU-CUUUAUUAUUUUAAACU .-.....---....(((((((((((....)))))).....(((((((((((((((.((((.....))))))))).)))))))))).)))))...-................. ( -32.70) >DroAna_CAF1 2623 112 - 1 AGUUUUCUCAACCUACCCUGCGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCGUUAUUUAACAGGGACAUAGUUGGCAGUAAAAAAAUGCACCGGUUUAUUCAAGGAAUAA ...........(((...((((.(((....((((.((((((((((((....).)))).))))))).))))...))).))))..............((.....)).)))..... ( -21.30) >consensus A_UUUUC___ACUCACCCUGUGGAUCCUCGUCCAUGUUGGGAAUGCUGUCGUCAUUGUUUAACAGGGACAUGGCUGGCAGUGUUCAAGGGUACU_CUUUAUUCUAUAAAACU ..............(((((((((((....)))))).....(((((((((((((((.((((.....))))))))).)))))))))).)))))..................... (-25.59 = -26.48 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:58 2006