Locus 8636

Sequence ID 3R_DroMel_CAF1
Location 23,098,717 – 23,098,818
Length 101
Max. P 0.841916
window13870

overview

Window 0

Location 23,098,717 – 23,098,818
Length 101
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 87.63
Mean single sequence MFE -24.22
Consensus MFE -20.08
Energy contribution -20.08
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.83
SVM decision value 0.75
SVM RNA-class probability 0.841916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23098717 101 - 27905053
UUUU--GCCUGCAUUUACGAGGUCGAACGAGCAGUAACACCCUCGCAGCA-ACAAACUGCAGUUCAAUCGAAUCAUACGGUUAAAGCAGGUAAGCCUACAUAUC
.(((--((((((.....(((....(((((((..........)))((((..-.....)))).))))..)))((((....))))...))))))))).......... ( -25.80)
>DroSec_CAF1 1829 94 - 1
UUAUACGCCUGCAUUGACGAGGUCGAACGAGCAUUAACACCCUCGCAGCA-ACAAACUGCACUU---------CAUACGGAUAAAGCAGGUAAGCCUACAUAUC
......((((((..((.(((((..(............)..)))))))(((-......)))....---------............))))))............. ( -20.00)
>DroSim_CAF1 1842 94 - 1
UUAUACGCCUGCAUUGACGAGGUCGAACGAGCAUUAACACCCUCGCAGCA-ACAAACUGCACUU---------CAUACGGAUAAAGCAGGUAAGCCUACAUAUC
......((((((..((.(((((..(............)..)))))))(((-......)))....---------............))))))............. ( -20.00)
>DroEre_CAF1 1846 102 - 1
UUUU--GCCUGCAUUUACGAGGUCGAACGAGCAUUAACACCCUCGCAGCAAACAAACUGCAGUUCAAUCGAAUCAUACAGAUAAAGCAGGUAAGCGUUUAUAUC
.(((--((((((.....(((....(((((((..........)))((((........)))).))))..))).(((.....)))...))))))))).......... ( -25.70)
>DroYak_CAF1 1871 101 - 1
UUUU--GCCUGCAUUUACGAGGUCGAACGAGCAUUAACACCCUCGCAGCU-ACAAGCUGCAGUUCAAUCGAAUCAUACGGAUAAAGCAGGUAAGCGUUUAUAUC
.(((--((((((.....(((....(((((((..........)))(((((.-....))))).))))..))).(((.....)))...))))))))).......... ( -29.60)
>consensus
UUUU__GCCUGCAUUUACGAGGUCGAACGAGCAUUAACACCCUCGCAGCA_ACAAACUGCAGUUCAAUCGAAUCAUACGGAUAAAGCAGGUAAGCCUACAUAUC
......((((((......((((..(............)..))))((((........)))).........................))))))............. (-20.08 = -20.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:57 2006