| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,094,620 – 23,094,740 |
| Length | 120 |
| Max. P | 0.921653 |
| Location | 23,094,620 – 23,094,740 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -54.47 |
| Consensus MFE | -31.02 |
| Energy contribution | -31.30 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23094620 120 + 27905053 ACCCUGGCGUGGCUGGCAGCGUUCGUUUAUCUGCAGAAAAUUGAACUCAUUCAGCUCGAACCGGACGGUGGAGUUCUGCAGGUUGGCCGGCUGCUGGCCGCGCCAUUUCAACAUGUUCAG ....(((((((((..(((((....((..(((((((((....((((....))))((((..(((....))).)))))))))))))..))..)))))..)))))))))............... ( -56.40) >DroPse_CAF1 5322 120 + 1 GCCCUUGCGCGGCUCGCAUCUCUCGUUCAGCUGCAGCAGGCUGUAGCGGUUGAUGUCGAAGCGCAGCGAAGAGUUGUGCAGGCUGCCCGGCUGUUGGCCGCGCCAACGCAGCAUAUGCAU ((...(((((((((((((((..((((((((((......))))).)))))..)))).))).(((((((.....)))))))..)))))...((.((((((...)))))))).)))...)).. ( -55.00) >DroEre_CAF1 4169 120 + 1 UCCUUGGCGCGGCUGGCAACGCUCGUUUAUCUGCAGGAGGUUGAACUGGUUCAGCUCGAACCGGAUGGUGGAGUUCUGCAGGUUGGCCGGCUGCUGGCCGCGCCAUUUCAGCAUGGUCAA ....(((((((((..(((..(((.((..((((((((((..(((..(((((((.....)))))))....)))..))))))))))..)).))))))..)))))))))............... ( -58.90) >DroYak_CAF1 4485 120 + 1 UCCUUCGCGCGGCUGGCAACGCUCGUUUAUCUGCAGGAGGUUGAACUGGUUCAGCUCGAACCGGAUGGUGGAGUUCUGCAGGUUGGCCGGCUGCUGGCCGCGCCAUUUCAGCAUGGUCAA ......(((((((..(((..(((.((..((((((((((..(((..(((((((.....)))))))....)))..))))))))))..)).))))))..)))))))................. ( -54.30) >DroAna_CAF1 4267 120 + 1 UCCUUGGCGCGGCUCGCAGCGUUCGUUUAGCUGCAACAGGUUGAAGCGGUUCAACUCGAACCGCAGCGAUGAGUUCUGCAGAUUCGCCGGCUGUUGACCGCGCCACUGCAGCAUUGGAAG (((.((((((((.(((((((...((.....(((((((..((((..(((((((.....)))))))..))))..))..)))))...))...)))).)))))))))))..........))).. ( -49.00) >DroPer_CAF1 5358 120 + 1 ACCCUUGCGCGGCUCGCAUCUCUCGUUCAGCUGCAGCAGGCUGUAGCGGUUGAUGUCGAAGCGCAGCGAAGAGUUGUGCAGGCUGCCCGGCUGUUGGCCGCGCCAACGCAGCAUAUGCAU ......((((((((((((((..((((((((((......))))).)))))..)))).))).(((((((.....))))))).((((....))))....)))))))....(((.....))).. ( -53.20) >consensus UCCCUGGCGCGGCUCGCAACGCUCGUUUAGCUGCAGCAGGUUGAACCGGUUCAGCUCGAACCGCAGCGAGGAGUUCUGCAGGUUGGCCGGCUGCUGGCCGCGCCAUUGCAGCAUGGGCAA ......(((((((..(((..(((.(((...(((((.(((.((.(.(((.(((.....))).)))....).)).))))))))...))).))))))..)))))))................. (-31.02 = -31.30 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:55 2006