Locus 8633

Sequence ID 3R_DroMel_CAF1
Location 23,090,468 – 23,090,583
Length 115
Max. P 0.877294
window13867

overview

Window 7

Location 23,090,468 – 23,090,583
Length 115
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.63
Mean single sequence MFE -41.85
Consensus MFE -30.73
Energy contribution -30.88
Covariance contribution 0.15
Combinations/Pair 1.42
Mean z-score -1.99
Structure conservation index 0.73
SVM decision value 0.90
SVM RNA-class probability 0.877294
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23090468 115 + 27905053
CACAUCGAUGAUGUUAUGCCGGAAUGCUAGGUCGAA--GGCAGGAAAGAUGCCAUCCAGAGGCAAUUCCUGCUCCUUUAGUUUCUCAGCAAAGGAGCGAAGGAGCUCCGGCAUGUUG
.(((((...)))))(((((((((..(((...(((..--.(((((((...((((.......)))).)))))))((((((.((......)))))))).)))...))))))))))))... ( -45.50)
>DroSec_CAF1 19 115 + 1
CACAUCGAUGAUGUUAUGCCGGAAUGCCAGGUCGAA--GGCCGGGAAGAUGUCAUCCAGAGGCCAUUCCUGCUCCUUCAGUUUCUCGGCAAAGGACCGGAGGAGCUCCGGCAUGUUG
.(((((...)))))(((((((((.....(((.....--((((.(((.(....).)))...))))...)))((((((((.(((..(.....)..))).)))))))))))))))))... ( -46.20)
>DroSim_CAF1 345 117 + 1
CACAUCGAUGAUGUUAUGCCGGAAUGCCAGGUCGAAUUGGCCGGGAAGAUGUCAUCCAGAGGCCAUUCCUGCUCCUUCAGUUUCUCGGCAAAGGAGCGGAGGAGCUCCGGCAUGUUG
.(((((...)))))(((((((((.....(((......(((((.(((.(....).)))...)))))..)))((((((((.((((((......)))))))))))))))))))))))... ( -50.80)
>DroEre_CAF1 19 115 + 1
CACAUCGAUGAUGUUAUGCCGGAAUGCCAGGUCGAA--GGCCGGAAAGAUCCCAUCUGGAGGCCAUUCCUGUUGCCCCAGUUUCUCUGCAAAGGAGCGGAGCAGCUCCGGCAUGUUG
.(((((...)))))(((((((((.....(((.....--((((....((((...))))...))))...)))(((((.((.((((((......)))))))).))))))))))))))... ( -42.80)
>DroWil_CAF1 124 115 + 1
CAGCUCGGCAAUAUUAUGACGAAAAGCUAGAUCAAA--AGCUGGAAAGAUGCCUUCCAGUGGCCAUUCCUUAUCCUUUAGCAGAUCAGAGAACUUGACCAUCAAUUCGGGGAUAUUA
.........((((((....((((..((((((.....--.(((((((.......)))))))((.....))......)))))).(.((((.....)))).).....))))..)))))). ( -21.20)
>DroYak_CAF1 344 115 + 1
CACAUCGAAGAUGUUAUGCCGGAAUGCCAGGUCGAA--GGCAGGGAAGAUGUCAUUUGAAGGCCAUUCUUGCUGCUCCAGUUUUUCGGCAAAGGAGCGGAGCAGUUCCGGCAUGUUG
.(((((...)))))(((((((((..(((...(((((--((((.......)))).))))).))).......((((((((.((((((......)))))))))))))))))))))))... ( -44.60)
>consensus
CACAUCGAUGAUGUUAUGCCGGAAUGCCAGGUCGAA__GGCCGGAAAGAUGCCAUCCAGAGGCCAUUCCUGCUCCUUCAGUUUCUCGGCAAAGGAGCGGAGCAGCUCCGGCAUGUUG
.(((((...)))))(((((((((..(((..........))).((((....(((.......)))..)))).((((((((.((((((......)))))))))))))))))))))))... (-30.73 = -30.88 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:54 2006