| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,080,790 – 23,080,896 |
| Length | 106 |
| Max. P | 0.954341 |
| Location | 23,080,790 – 23,080,896 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 72.30 |
| Mean single sequence MFE | -34.60 |
| Consensus MFE | -19.95 |
| Energy contribution | -19.87 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23080790 106 + 27905053 UAAUCCUCUAU-UC-AUUUUCAGGCAGCGAAUGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGUCACAUCACACCAACAUAUCGGCGGCAACAGCUCCAUGUCCU ...........-..-.......((.(((.........((((.....))))((((((((....))(((........)))........))))))....)))))....... ( -32.90) >DroVir_CAF1 3979 94 + 1 UAAUAACUUUUCUU-AUUCGCAGGCUGCCAAUGCCAAGGCCAAAAAAGCCGCCGCCGC---UGCAGCUGCUUCACAACAGAACAACAGCGG---CG---C--CACC-- ..............-....((.((((......((....))......))))))((((((---((...(((........))).....))))))---))---.--....-- ( -27.60) >DroGri_CAF1 4379 103 + 1 UAACUGCUUGUCGAAUUUUGCAGGCUGCCAAUGCCAAGGCCAAAAAGGCCGCCGCCGC---UGCGGCUGCCUCCCAACAGAGUAGCGGUGCCGUUGGUGG--AGCCGU ....(((..(......)..)))(((((((((((....((((.....))))..((((((---(((..(((........))).))))))))).)))))))..--)))).. ( -42.30) >DroSec_CAF1 541 106 + 1 UAAUGCUCUAU-UC-AUUUGCAGGCAGCGAAUGCCAAGGCUAAGAAGGCCGCCGCCGCAACCGCGGUCACAUCACACCAACAUAUGGGCGGCAGUAGCUCUAUGUCCU ....(((((..-.(-((((((.....)))))))....((((.....))))((((((((....))(((........)))........)))))))).))).......... ( -33.30) >DroEre_CAF1 540 106 + 1 UAAUCCUCUUU-CC-CUUUGCAGGCAGCCAAUGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGCCACAUCACAGCCACAGAUCGGCAGCAGCGGCUCCGCGUCCU ...........-..-....((.((.((((..(((...((((.....))))((((((((....)))))...(((.........))).))).)))..))))))))..... ( -37.10) >DroYak_CAF1 553 106 + 1 UAAUUCUCUAU-CA-CUUUGCAGGCAGCCAAUGCCAAGGCCAAGAAGGCCGCCGCAGCAACCGCGGUCACAUCACAGCCACAGAUCGGCGGCAGCAGCUCCGCGUCCU ...........-..-....((.((.(((...((((..((((.....))))(((((.......))))).........(((.......)))))))...)))))))..... ( -34.40) >consensus UAAUCCUCUAU_UC_AUUUGCAGGCAGCCAAUGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGCCACAUCACAACAACAUAUCGGCGGCAGCAGCUCC_CGUCCU ..................(((.(((.((....))...((((.....)))))))(((((....)))))....................))).................. (-19.95 = -19.87 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:53 2006