Locus 8631

Sequence ID 3R_DroMel_CAF1
Location 23,079,426 – 23,079,528
Length 102
Max. P 0.990781
window13865

overview

Window 5

Location 23,079,426 – 23,079,528
Length 102
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 72.66
Mean single sequence MFE -31.43
Consensus MFE -11.46
Energy contribution -11.29
Covariance contribution -0.16
Combinations/Pair 1.29
Mean z-score -2.78
Structure conservation index 0.36
SVM decision value 2.23
SVM RNA-class probability 0.990781
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23079426 102 + 27905053
AUCCUA--CCAAGGAGUUUCUCCAUUUCCUCCAGCUUCACCUCCUUC--CGCCGCCCACGCGGGAAAGUGAAAGCUU-UCCCAGUGGUCAUGGUAGUUACUACAA---A---A
...(((--(((.((((...))))........................--....(.((((..((((((((....))))-)))).)))).).)))))).........---.---. ( -33.10)
>DroSec_CAF1 14309 102 + 1
AUCCUA--CCAAGGAGUUUCUCCGUUUUCUCCAGCUCCACCUCCUUU--CGCCGCCCACGCGGGAAAGUGAAAGCUU-UCCCAGUGAUCAUGGUAGUUACUACAA---A---A
...(((--(((.((((((..............))))))........(--(((.((....))((((((((....))))-)))).))))...)))))).........---.---. ( -32.24)
>DroSim_CAF1 14732 102 + 1
AUCCUA--CCAAGGAGUUUCUCCAUUUCCUCCAGCUCCACCUCCUUC--CGCCGCUCACGCGGGAAAGUGAAAGCUU-UCCCAGUGGUCAUGGUAGUUACUACAA---A---A
...(((--(((.((((((..............))))))........(--(((.((....))((((((((....))))-)))).))))...)))))).........---.---. ( -34.04)
>DroEre_CAF1 14444 105 + 1
AUCCUA--CCAAGGAGUUUCUCCUCCACCUGCUCCUCCGCCUCCUUC--CGGCGCCCACGCGCGAAAGUGAAAGCUU-UCCCAGUGGUCAUGA---UUACUACAGUUGUACUA
......--....((((......))))..(((......((((......--.)))).((((..(.((((((....))))-)).).))))......---......)))........ ( -25.40)
>DroYak_CAF1 13429 98 + 1
AUCCUAUAUCAAGGAGUUUCUCCUCCAC---------CACCUCCUUC--CGCCGCCCACGCGGGAAAGUGAAAGCUU-UCCAAGUGGUCAUGA---UUACUACAGUUGUACUA
.......((((.((((......))))((---------(((.......--...(((....)))(((((((....))))-)))..)))))..)))---)................ ( -26.50)
>DroAna_CAF1 13158 98 + 1
AAGCGG--UC-AGGAGUUGGGGCCGGGCCCCUUCGUCCCUCUCCUUCGUGGCUGCCCACCUGGAAAAGUGAAAGUUUGUCCCAUUGAGUGUGGG--GCAC----G---G---A
..((((--((-(((((..(((((.((....))..))))).))))....))))))).(((.(....).)))......((((((((.....)))))--))).----.---.---. ( -37.30)
>consensus
AUCCUA__CCAAGGAGUUUCUCCAUUUCCUCCAGCUCCACCUCCUUC__CGCCGCCCACGCGGGAAAGUGAAAGCUU_UCCCAGUGGUCAUGGU__UUACUACAA___A___A
..........((((((........................)))))).....((((....))))....((((..(((......)))..))))...................... (-11.46 = -11.29 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:52 2006