Locus 8630

Sequence ID 3R_DroMel_CAF1
Location 23,071,266 – 23,071,360
Length 94
Max. P 0.625951
window13864

overview

Window 4

Location 23,071,266 – 23,071,360
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.27
Mean single sequence MFE -17.99
Consensus MFE -13.15
Energy contribution -13.27
Covariance contribution 0.11
Combinations/Pair 1.25
Mean z-score -1.56
Structure conservation index 0.73
SVM decision value 0.19
SVM RNA-class probability 0.625951
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23071266 94 + 27905053
---U-C--CCUUCAACAAAUCGCUUUUCUUGGAGCAUAAUGCACACACACACUGGCACA-GUCACACCGACACGUAUGUGCCGGUCAUCAUCAUCAUCAUU
---.-.--.............(((((....)))))...............(((((((((-(((.....))).....)))))))))................ ( -19.20)
>DroSec_CAF1 6162 93 + 1
-----C--CGUUCAACAAAUCGCUUUUCUUGGAGCAUAAUGCACACACACACUGGCACA-GUCACACCGACACGUAUGUGCCGGUCAUCAUCAUCAUCAUU
-----.--.............(((((....)))))...............(((((((((-(((.....))).....)))))))))................ ( -19.20)
>DroSim_CAF1 4334 93 + 1
-----C--CGUUCAACAAAUCGCUUUUCUUGGAGCAUAAUGCACACACACACUGGCACA-GUCACACCGACACGUAUGUGCCGGUCAUCAUCAUCAUCAUU
-----.--.............(((((....)))))...............(((((((((-(((.....))).....)))))))))................ ( -19.20)
>DroEre_CAF1 6383 97 + 1
UCUGCC---CAACAACAAAUCGCUUCUCUUGGAGCAUAAUGCACACUCACACUCGUACA-GCCGCACCGACGCGUAUGUGCCGGUCAUCAUCAUCAUCAUU
..((.(---(...........(((((....)))))...................(((((-..(((......)))..))))).)).)).............. ( -19.40)
>DroYak_CAF1 5373 98 + 1
UCUCCC--CCGCCAACAAAUCGCUUCUCUUGGAGCAUAAUGCACACACACACUUGUACA-GGCACACCGACACGUAUGUGCCGGUCAUCAUCAUCAUCAUU
......--..(((........(((((....)))))....((.(((........))).))-)))..((((.(((....))).))))................ ( -20.40)
>DroAna_CAF1 5064 93 + 1
UCUGCCCCACUGCAAU-AACAGCUUUUGUUGAAGCC-------AACACACACGGACACAACUCACACGUACAUGUAUUUGCCGGUCAUCAUCAUCAUCAUU
..((.((....((((.-.((((((((....))))).-------.......(((.............)))...)))..)))).)).)).............. ( -10.52)
>consensus
_____C__CCUUCAACAAAUCGCUUUUCUUGGAGCAUAAUGCACACACACACUGGCACA_GUCACACCGACACGUAUGUGCCGGUCAUCAUCAUCAUCAUU
.....................(((((....)))))...............(((((((((....((........)).)))))))))................ (-13.15 = -13.27 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:51 2006