Locus 863

Sequence ID 3R_DroMel_CAF1
Location 2,915,117 – 2,915,207
Length 90
Max. P 0.996772
window1375

overview

Window 5

Location 2,915,117 – 2,915,207
Length 90
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 75.95
Mean single sequence MFE -23.53
Consensus MFE -11.98
Energy contribution -15.07
Covariance contribution 3.09
Combinations/Pair 1.08
Mean z-score -4.53
Structure conservation index 0.51
SVM decision value 2.75
SVM RNA-class probability 0.996772
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2915117 90 - 27905053
GCACAAAGUACAUACAU----AAUGUGUAUGUACAAACGCGGUCACUUCAAUACGUACAUACA----UACAUAUUUAACUC--GUAGACUCGUAGUUAAA
.......((((((((((----...)))))))))).(((((((((((((.((((.(((......----))).)))).))...--)).))).))).)))... ( -18.20)
>DroSec_CAF1 5923 86 - 1
GCACAAAGUACAUACAU-----------AUGUACAAACGCUGUCACUUGAAUAUGUACAUAUGUAUGUAUAUAUUUAACUUU---AGCCUCUUAGUGAAA
.(((...((((((....-----------))))))....((((....((((((((((((((....))))))))))))))...)---)))......)))... ( -24.40)
>DroSim_CAF1 5951 92 - 1
GCACAAAGUACAUACAUACAUAAUAUGUAUGUACAAACGCGGUCACUUGAAUAUGUACAUA--------UAUAUUUAACUAUACCAGCCUCUUUGUGAAA
.(((((((((((((((((.....)))))))))))....(((((...((((((((((....)--------)))))))))....))).))...))))))... ( -28.00)
>consensus
GCACAAAGUACAUACAU____AAU_UGUAUGUACAAACGCGGUCACUUGAAUAUGUACAUA______UAUAUAUUUAACUAU___AGCCUCUUAGUGAAA
.(((...(((((((((((.....)))))))))))............(((((((((((..........)))))))))))................)))... (-11.98 = -15.07 +   3.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:05 2006