Locus 8628

Sequence ID 3R_DroMel_CAF1
Location 23,068,733 – 23,068,823
Length 90
Max. P 0.701955
window13862

overview

Window 2

Location 23,068,733 – 23,068,823
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 79.81
Mean single sequence MFE -40.17
Consensus MFE -29.17
Energy contribution -27.59
Covariance contribution -1.58
Combinations/Pair 1.46
Mean z-score -1.33
Structure conservation index 0.73
SVM decision value 0.35
SVM RNA-class probability 0.701955
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23068733 90 - 27905053
CGGCCGUGGCGGCGGUGGCUGCCGCUGCCUCAGCCCGCCUGGCGGAUAACAACAUGGAUCAGCAAAUGAACACGGCUGCCGGUGGAAGCG
.(((.((((((((....)))))))).)))...(((((((.(((((.......(((..........))).......))))))))))..)). ( -39.44)
>DroVir_CAF1 3506 90 - 1
CGGCGGUGGCAGCUGUUGCGGCUGCUGCCUCGGCACGCCUCGCCGACAGCAACAUGGAGCAACAAAUGCAAAAUGCGGCUGGCGCCAGUG
.(((((..(((((((...)))))))..))(((((.......)))))((((..(((...(((.....)))...)))..))))..))).... ( -42.80)
>DroPse_CAF1 2769 87 - 1
CGGCCGUGGCGGCGGUGGCUGCCGCUGCAUCCGCUCGCCUCGCGGACAACAACAUGGAGCAGCAGAUGAAU---GCUGCGGGCGGCAGUG
..(((((.((((((((....)))))))).(((((.......)))))............((((((......)---)))))..))))).... ( -42.20)
>DroGri_CAF1 3560 90 - 1
CGGCAGUGGCAGCUGUGGCGGCUGCGGCUUCCGCACGCCUUGCCGACAGCAACAUGGAGCAGCAAAUGCAGAAUGCGGCAGGCGCCAGUG
.(((.((((.(((((..(...)..))))).))))..((((.((((.((((........)).((....))....))))))))))))).... ( -40.40)
>DroAna_CAF1 2710 90 - 1
CUGCUGUGGCAGCAGUGGCUGCAGCUGCCUCUGCUCGUCUGGCGGAUAACAACAUGGACCAGCAGAUGAACACCGCCGCUGGAGGUAGUG
((((((.((((((.((....)).))))))((((((.....)))))).............)))))).....(((..((......))..))) ( -34.00)
>DroPer_CAF1 1714 87 - 1
CGGCCGUGGCGGCGGUGGCUGCCGCUGCAUCCGCUCGCCUCGCGGACAACAACAUGGAGCAGCAGAUGAAU---GCUGCGGGCGGCAGUG
..(((((.((((((((....)))))))).(((((.......)))))............((((((......)---)))))..))))).... ( -42.20)
>consensus
CGGCCGUGGCAGCGGUGGCUGCCGCUGCCUCCGCUCGCCUCGCGGACAACAACAUGGAGCAGCAAAUGAACA__GCUGCGGGCGGCAGUG
..((.((((((((((...)))))))))).......((((.(((((.......(((..........))).......)))))))))...)). (-29.17 = -27.59 +  -1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:49 2006