| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,060,262 – 23,060,367 |
| Length | 105 |
| Max. P | 0.837736 |
| Location | 23,060,262 – 23,060,367 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.57 |
| Mean single sequence MFE | -37.75 |
| Consensus MFE | -17.08 |
| Energy contribution | -18.77 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23060262 105 - 27905053 UCUCAUCGAGCGUCUCCAGUCGAGGCAGGCUCACAAUCAUGCUCCCUUGAUCCGGCUCUUGGGAAAUGCAUGUUUGAUCCAGUUGAGCACAGCUGGAGGCAUCCU .......(((((((((.....)))))..)))).(((.(((((((((..((......))..))))...))))).))).((((((((....))))))))........ ( -37.40) >DroVir_CAF1 15185 105 - 1 UGCUAUCCUCUAGCUCCAGAUGUGGCAGCGGCACAAUCAUCUGCUCAUUCUGUGCAUCGCUAUUUGCACAGCUGUGAUCCAGCAGGGCACAGCUGGACGCAUCGU .((((.....))))....(((((((((((((((........)))).....((((((........)))))))))))..((((((........)))))))))))).. ( -38.70) >DroSec_CAF1 4716 105 - 1 UCUCAUCGAGCGUCUCCAGUCGAGGCAGGCUCACAAUCAUGCUCCCUUGAUCCGGCUCUUGGGAAAUGCAAGUCUGAUCCAGUUGAGCACAGCUGGAGGCAUCCU .......(((((((((.....)))))..)))).......(((((((..((......))..))))...))).(((...((((((((....)))))))))))..... ( -32.80) >DroEre_CAF1 4737 105 - 1 GAUCAUCCACAGCCUCCAGUCGGGGCAGGGUCACAAUCAUACUGCCUUGAUCCGGCUCUUGGGAAAUGCAAGAUUGCUCUAGUUGAGUACAACUGGAGGCAUCCU ...........(((((((((((((((((.............)))))))))......(((((.......))))).(((((.....)))))...))))))))..... ( -37.72) >DroYak_CAF1 4724 105 - 1 UCUCAUCCAGAGUCUCCAGUCGGGGCAGAGUCACAAUCAUGUUGCCUUGAUCCGGCUCUUGGGAGAUGCAACUUUGAUCUAGUUGGGCACAGCUGGAGGCAUCCU (((((...((((((....((((((((((.((.......)).))))))))))..)))))))))))(((((........((((((((....)))))))).))))).. ( -37.90) >DroAna_CAF1 7164 102 - 1 UCUCGUCCAUUGCCUCCAGACAGGGCAGGGGGACAAUCAUUUGGCCCUGGUCCGCCGCCUUG---AUCUGGCUCUGAUCCAGGAAGGCACAACAGGAGGCAUCAU ..........(((((((.....((((.((((..(((....))).)))).))))(((.(((.(---(((.......)))).)))..)))......))))))).... ( -42.00) >consensus UCUCAUCCAGAGUCUCCAGUCGGGGCAGGGUCACAAUCAUGCUCCCUUGAUCCGGCUCUUGGGAAAUGCAACUUUGAUCCAGUUGAGCACAGCUGGAGGCAUCCU ...........((((((..(((((((.((((((..............)))))).)).)))))..................(((((....)))))))))))..... (-17.08 = -18.77 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:47 2006