Locus 8625

Sequence ID 3R_DroMel_CAF1
Location 23,054,979 – 23,055,083
Length 104
Max. P 0.802814
window13859

overview

Window 9

Location 23,054,979 – 23,055,083
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 83.85
Mean single sequence MFE -30.78
Consensus MFE -23.03
Energy contribution -24.17
Covariance contribution 1.14
Combinations/Pair 1.32
Mean z-score -2.56
Structure conservation index 0.75
SVM decision value 0.62
SVM RNA-class probability 0.802814
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23054979 104 - 27905053
AAGUUGUAUUUCAAAGAUUUGGUUUGGUCCGAUGCCCAAGGAUUCGAAUUGGAUUAAGCCAGGUCGACUUCACUACAUCGAAAACGAUGUGGAGAAACAGGUGG
.(.((((........((((((((((((((((((..............))))))))))))))))))...(((.((((((((....)))))))).))))))).).. ( -36.94)
>DroVir_CAF1 67166 104 - 1
AAGUCAAAUAACAAAAAUUUGGUUUACACCGUUGCCCAAGGAUUCUAAAUGGAUAGCACCGUGCCAAAUGCACUACGUUGAAAAUGGGAAAGAAAAGAUUCGAG
((..(((((.......)))))..))...(((((...(((.(((((.....))))......((((.....))))..).)))..)))))................. ( -16.00)
>DroSec_CAF1 56776 104 - 1
AAGUUGUAUUUCAAGGAUUUGGUUUGGUCCGAUGCCCAAGGAUUCGAAUUGGAUCAAACCAGGUCGACUUCACUACAUAGAAAACGAUGUGGAGAAACAAGUGG
.(.((((........((((((((((((((((((..............))))))))))))))))))...(((.((((((........)))))).))))))).).. ( -33.84)
>DroSim_CAF1 40297 104 - 1
AAGUUGUAUUUCAAGGAUUUGGUUUGGUCCGAUGCCCAAGGAUUCGAAUUGGAUUAAACCAGGUCGACUUCACUACAUCGAAAACGAUGUGGAGAAACAAGUGG
.(.((((........((((((((((((((((((..............))))))))))))))))))...(((.((((((((....)))))))).))))))).).. ( -37.04)
>DroEre_CAF1 62589 104 - 1
AAGUUGUAUUUCAAGGAUUUGGUUUGGUCCGAUGCCCAAGGACUCGAAUUGGAUAAAACCAGGUCGUCUUCACUACAUCGAAAACGAGGUGGAAAAACAAGUGG
.(.((((.((((...((((((((((.(((((((..............))))))).)))))))))).....((((...(((....))))))))))).)))).).. ( -29.34)
>DroYak_CAF1 61953 104 - 1
GAGUUGUAUAUCAAGGAUUUGGUUUGGUCCGAUGCCCAAGGACUCGAAUUGGAUAAAACCAGGUCGUCUUCAUUUCAUCGAAAACGAUGUGGAGAAACAAGUGG
.(.((((........((((((((((.(((((((..............))))))).)))))))))).((((((...(((((....))))))))))).)))).).. ( -31.54)
>consensus
AAGUUGUAUUUCAAGGAUUUGGUUUGGUCCGAUGCCCAAGGAUUCGAAUUGGAUAAAACCAGGUCGACUUCACUACAUCGAAAACGAUGUGGAGAAACAAGUGG
...............((((((((((.(((((((..............))))))).))))))))))...(((.((((((((....)))))))).)))........ (-23.03 = -24.17 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:46 2006