Locus 8623

Sequence ID 3R_DroMel_CAF1
Location 23,046,562 – 23,046,657
Length 95
Max. P 0.559712
window13856

overview

Window 6

Location 23,046,562 – 23,046,657
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.10
Mean single sequence MFE -31.98
Consensus MFE -20.99
Energy contribution -21.88
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -1.94
Structure conservation index 0.66
SVM decision value 0.05
SVM RNA-class probability 0.559712
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23046562 95 - 27905053
CCGGUUGC--ACAUGGUCAACUGAUUGACGAGUUGCGUACCUCAAAUGUGCAGCUAACACGCACACAGGUGCGUGCCCCUCGAGGAGCAUCCAAG--UG
..((((((--((((.(((((....)))))(((........)))..))))))))))..(((((((....))))((((.((....)).))))....)--)) ( -33.80)
>DroPse_CAF1 68126 87 - 1
CCGGUUGC--ACAUGGUCAACUGAUUGACGAGUUGCGUACCUCAAAUGUGCAGCUAACACGCACACAGGUGCGUGCCACUCC----------AAGUGUG
..((((((--((((.(((((....)))))(((........)))..))))))))))..(((((((....))))))).(((...----------..))).. ( -32.70)
>DroWil_CAF1 60324 89 - 1
CCGGUUGGGCAGUUGGGCAUCUGAUUGACGAGCUGCGUACCUCAAAUGUGCAGUCAACACGCACACAAGUGCGUAUAUCUCU--------CUCUG--UG
...(((((((((((.(.((......)).).))))))((((.......))))..)))))((((((....))))))........--------.....--.. ( -26.40)
>DroYak_CAF1 53300 97 - 1
CCGGUUGC--ACAUGGUCAACUGAUUGACGAGUUGCGUACCUCAAAUGUGCAGCUAACACGCACACAGGUGCGUGCCCCUCGAGGAGCAACCAUGUGUG
......((--(((((((...((..((((.(.(..((((((((....(((((.........))))).))))))))..)).))))..))..))))))))). ( -35.50)
>DroAna_CAF1 52291 81 - 1
CCGGUUGC--ACAUGGUCAACUGAUUGACGAGUUGCGUACCUCAAACGUGCAGCUAACACGCACACAGGUGCGUGCCCCUCGG----------------
((((((((--((...(((((....)))))(((........)))....)))))))...(((((((....))))))).....)))---------------- ( -30.80)
>DroPer_CAF1 54291 87 - 1
CCGGUUGC--ACAUGGUCAACUGAUUGACGAGUUGCGUACCUCAAAUGUGCAGCUAACACGCACACAGGUGCGUGCCACUCC----------AAGUGUG
..((((((--((((.(((((....)))))(((........)))..))))))))))..(((((((....))))))).(((...----------..))).. ( -32.70)
>consensus
CCGGUUGC__ACAUGGUCAACUGAUUGACGAGUUGCGUACCUCAAAUGUGCAGCUAACACGCACACAGGUGCGUGCCCCUCG__________AAG__UG
..((((((..((((.(((((....)))))(((........)))..))))))))))..(((((((....)))))))........................ (-20.99 = -21.88 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:44 2006