| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,044,950 – 23,045,041 |
| Length | 91 |
| Max. P | 0.590173 |
| Location | 23,044,950 – 23,045,041 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.42 |
| Mean single sequence MFE | -14.87 |
| Consensus MFE | -9.81 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23044950 91 + 27905053 UUUUUUGUUACCUUUCGAGUUGGUCUUCAAC-UUGAGUUUUAUUU-UUAACUUAAUUUCUGGCCGACCA---AGAUU-----CCUCG----A----GCCUUCGAUUCCC---- .............((((((((((((.(((..-(((((((......-..)))))))....)))..)))))---)....-----.))))----)----)............---- ( -16.30) >DroSim_CAF1 30089 91 + 1 UUUUUUGUUACCUUUCGAGUUGGUCUUCAAC-UUGAGUUUUAUUUUUUAACUUAAUUUCUGGCCGGCCA---AGAUU-----CCUCG----A----GCC-UCGAUUCCC---- ..............((((...((((...((.-(((((((.........))))))).))..))))((((.---((...-----.)).)----.----)))-)))).....---- ( -16.60) >DroEre_CAF1 50548 90 + 1 UUUUUUGUUACCUUUCGAGUUGGUCUUCAAC-UUGAGUUUUAUUU-UUAACUUAAUUUCUGGCCGGCCA---AGAUA-----CCACA----A----GCC-UCGAUUCCC---- ..............(((((..((((...((.-(((((((......-..))))))).))..))))((...---.....-----))...----.----..)-)))).....---- ( -16.20) >DroYak_CAF1 51625 95 + 1 UUUUUUGUUACCUUUCGAGUUGGUCUUCAAC-UUGAGUUUUAUUU-UUAACUUAAUUUCUGGCCAACCA---AGAUAUGUACCUCCA----A----GCC-UCGAUUCCC---- ........(((...((..(((((((...((.-(((((((......-..))))))).))..)))))))..---.))...)))......----.----...-.........---- ( -15.90) >DroAna_CAF1 50604 96 + 1 UUUUUUGUUACCUUUCGAGUUGGUCCUCAAG-UGGAUUUUUAUUU-UUAACUUAAUUUCUUGCCGGCCA---AGAUU-----CCUCG----CUG--CCC-UCCACUCGCCAAA ...............(((((.(((((.....-.))).........-..................(((..---.((..-----..)).----..)--)).-.)))))))..... ( -13.90) >DroPer_CAF1 52378 100 + 1 U--UUUGUUACCUUUCGAGUUGGUCUUCAAGUUUGAGUUUUAUUU-UUAACUUAAUUUCUUGCC--CCAUCCCCAUU-----CCCAUCCCCAUCUCCUC-UCCUUUCUG--AC .--.............((((.((....((((.(((((((......-..)))))))...))))..--.....)).)))-----)................-.........--.. ( -10.30) >consensus UUUUUUGUUACCUUUCGAGUUGGUCUUCAAC_UUGAGUUUUAUUU_UUAACUUAAUUUCUGGCCGGCCA___AGAUU_____CCUCG____A____GCC_UCGAUUCCC____ ................(.(((((((.......(((((((.........))))))).....))))))))............................................. ( -9.81 = -10.53 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:43 2006