Locus 8621

Sequence ID 3R_DroMel_CAF1
Location 23,044,042 – 23,044,154
Length 112
Max. P 0.804012
window13854

overview

Window 4

Location 23,044,042 – 23,044,154
Length 112
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 86.83
Mean single sequence MFE -23.34
Consensus MFE -19.72
Energy contribution -19.80
Covariance contribution 0.08
Combinations/Pair 1.18
Mean z-score -1.67
Structure conservation index 0.84
SVM decision value 0.63
SVM RNA-class probability 0.804012
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23044042 112 - 27905053
AGCUAAGCGGAAGCUUGUAAAUAAAAUAUUAAUGCCCCGAACCAAUGGCAAAGUGCCGGGUAAUAUUAAUAAAUUCCCAUGUGGUCGCCACAC-AUUUUAUUGUAAUAUUUCC
.((.((((....)))))).....((((((((.(((((.........(((.....))))))))....(((((((......(((((...))))).-..))))))))))))))).. ( -25.20)
>DroSec_CAF1 45926 112 - 1
AGCUAAGCGGAAGCUUGUAAAUAAAAUAUUAAUGCCCCGAACCAAUGGCAAAGUGUCGGGUGAUUUUAAUAAAUUCCCAUGUGGUCUCUACAU-AUUUUAUUGUAAUAUUUCC
.((.((((....)))))).(((((((((....((((..........)))).......(((.(((((....)))))))).(((((...))))))-))))))))........... ( -23.10)
>DroSim_CAF1 28918 112 - 1
AGCUAAGCGGAAGCUUGUAAAUAAAAUAUUAAUGAUCACAACCGAUGGCAAGGUGCCGGGUGAUUUUAAUAAUUUCCCAUGUGGUCUCCACAU-AUUUUAUUGUAAUAUUUCC
.((.((((....)))))).((((((((((....(((((((......(((.....)))(((.((((.....)))).))).))))))).....))-))))))))........... ( -32.70)
>DroEre_CAF1 49877 112 - 1
AGUUAAGCGGUAGCUUGUAUGUAAAAUUUUAAUACCCAAAACCCAUGGCAAACUGCCAGGUAAUUUUUAUAAAUACCCAUGUGGUCUCCACAU-UUUUUAUUAUAAUAUUUUC
...(((((....))))).......................(((..((((.....))))))).....((((((......((((((...))))))-......))))))....... ( -18.80)
>DroYak_CAF1 50972 113 - 1
AGCUAAGCGGCAGCUUGUAAAUAAAAUUUUAAUACCCAAAACCAAUGGUAAACUGCCAGUUAAUUUUAAUAAAUACCCAUGUGGUCUUCACAUAUUUUUAUUAUAAUAUUUCC
.....((((((((....((((......)))).((((..........))))..))))).))).(((.(((((((.....(((((.....)))))...))))))).)))...... ( -16.90)
>consensus
AGCUAAGCGGAAGCUUGUAAAUAAAAUAUUAAUGCCCAAAACCAAUGGCAAAGUGCCGGGUAAUUUUAAUAAAUUCCCAUGUGGUCUCCACAU_AUUUUAUUGUAAUAUUUCC
...(((((....)))))......((((((((.........(((..((((.....))))))).....(((((((.....((((((...))))))...))))))))))))))).. (-19.72 = -19.80 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:42 2006