Locus 8620

Sequence ID 3R_DroMel_CAF1
Location 23,037,416 – 23,037,507
Length 91
Max. P 0.997167
window13853

overview

Window 3

Location 23,037,416 – 23,037,507
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 92.29
Mean single sequence MFE -24.88
Consensus MFE -22.63
Energy contribution -22.60
Covariance contribution -0.03
Combinations/Pair 1.09
Mean z-score -2.41
Structure conservation index 0.91
SVM decision value 2.81
SVM RNA-class probability 0.997167
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23037416 91 - 27905053
-CAAGAAACGUAACCGAGUCAGCAAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGAACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGA
-............((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..))))).)). ( -24.30)
>DroPse_CAF1 57813 92 - 1
AACAGAAACGUAACCGAGUCACCGAAAUAAAAAGGUUAAUUGAGGAAACAUCGGUGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGAC
(((.....(((.(((((...(((..........))).......(....).)))))..)))((.((((((....))))))))..)))...... ( -24.80)
>DroSec_CAF1 39435 91 - 1
-CAAGAAACGUAACCGAGUCAGCGAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGA
-............((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..))))).)). ( -24.70)
>DroYak_CAF1 44385 91 - 1
-CAAGAAACGAAACCGAGUCAGCUAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGA
-............((...((((((..........(((..(((((....).))))..)))((((..((((....)))))))).)))))).)). ( -25.40)
>DroAna_CAF1 42708 90 - 1
-C-AGAAACGUAACCAAGUCAGCAAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCAGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGUA
-.-.........(((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..)))))))). ( -24.50)
>DroPer_CAF1 44041 92 - 1
AACAGAAACGUAACCGAGUCACCGAAAUAAAAAGGUUAAUUGAGGAAACAUCGGUGGACGGGCGUGAUGUGAGCAUCGCCCAUGUUGAGGAC
((((....(((.(((((...(((..........))).......(....).)))))..)))((.((((((....)))))))).))))...... ( -25.60)
>consensus
_CAAGAAACGUAACCGAGUCAGCGAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGA
.............((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..))))))).. (-22.63 = -22.60 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:41 2006