| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,036,161 – 23,036,257 |
| Length | 96 |
| Max. P | 0.874467 |
| Location | 23,036,161 – 23,036,257 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.86 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23036161 96 - 27905053 AAUACCCGGAUCCCCGGAUCCUCA-GAUCCUCCGAUC----------------CGCAGUGCCCAUAACGGGGACUGGGGUCUGC----AACUGCAAUAACCAAAUCAUUGCUCAAUC ...(((((((((...(((((....-)))))...))))----------------).((((.(((.....))).))))))))....----....(((((.........)))))...... ( -33.50) >DroSec_CAF1 38216 84 - 1 -----------CCCCGGAUACCCA-GAUCCUCCGAUC----------------CGCAGUGCCCAUAACGGGGACUGG-GCCUGC----AACUGCAAUAACCAAAUCAUUGCUCAAUC -----------....((((.....-.)))).......----------------.((((.(((((....(....))))-))))))----....(((((.........)))))...... ( -23.00) >DroEre_CAF1 42199 111 - 1 CAGCCCCGGAUCCCCGGACCCCCA-GAUCCUCCGAUCCGCCGAUCCGCCGAUCCCCAGUGUCCAUAACGGGGCCUGG-GCCUCC----AACUGCAAUAACCAAAUCAUUGCUCAAUC ..((((((((((..((((.(..(.-((((....)))).)..).))))..)))))...((.......))))))).(((-....))----)...(((((.........)))))...... ( -30.80) >DroYak_CAF1 43061 99 - 1 -AG---UGGAACCCCGGAUCCCCAUGAUCCUCCGAUUU-------------CCCCAAGUGGCCAUAACGGGGCCUGG-ACCUCCUCCAAACUGCAAUAACCAAAUCAUUGCUCAAUC -..---((((.(((((((((.....)))))........-------------..((....)).......))))...((-....))))))....(((((.........)))))...... ( -22.00) >consensus _AG___CGGAUCCCCGGAUCCCCA_GAUCCUCCGAUC________________CCCAGUGCCCAUAACGGGGACUGG_GCCUCC____AACUGCAAUAACCAAAUCAUUGCUCAAUC ...........(((((((((.....)))))...........................((.......))))))....................(((((.........)))))...... (-14.20 = -14.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:40 2006