Locus 8616

Sequence ID 3R_DroMel_CAF1
Location 23,023,100 – 23,023,217
Length 117
Max. P 0.507246
window13848

overview

Window 8

Location 23,023,100 – 23,023,217
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -35.27
Consensus MFE -24.82
Energy contribution -25.32
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.507246
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23023100 117 - 27905053
CUGGAUGUGCCUGGGUAUACCUGGU-G--CUGGUCUACUGUCUACUGGCGGUGACGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
..((.(((((....)))))))((((-(--..(((((.((.((...(.(((....))).)..((((((.....))))))..)).)))))))..)))))(((((....)))))......... ( -36.30)
>DroPse_CAF1 41823 103 - 1
---G---CACAUGGAC--ACA---------UGGACACAUGGGCACUGGCGGUGGCGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
---.---..((((...--.))---------))((((.(..((.((((((((..(((....)((((((.....)))))).........))..)))))..))).))..)...))))...... ( -35.50)
>DroSec_CAF1 25432 114 - 1
CUGGAUGUGCCU----AUACCUGGUUG--UUGGUCUACUGUCUACUGGCGGUGGCGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
...((((((.(.----..(((......--..)))...........((((((..(((....)((((((.....)))))).........))..))))))(((((....)))))).)))))). ( -32.60)
>DroYak_CAF1 29775 119 - 1
CUGGAUGUACUCGGGUAUACCUGGU-GCGCUGGUCUACUGUCUACUGGCAGUGGCGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
(..(.(((((.((((....))))))-))))..).((((((((....)))))))).(((((((((....)))))).)))((((....(((....))).(((((....))))).)))).... ( -38.70)
>DroAna_CAF1 26154 90 - 1
CU------------------------------GUCUGCAGUCUGGCGGCGGUGGCGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
..------------------------------.....((((.(((((((((..(((....)((((((.....)))))).........))..))))).(((((....))))))))).)))) ( -32.50)
>DroPer_CAF1 27782 106 - 1
CUGG---CACAUGGAC--ACA---------UGGACACAUGGGCACUGGCGGUGGCGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
.(((---((((((...--.))---------))...(((...((..((((((..(((....)((((((.....)))))).........))..))))))..))...)))...)))))..... ( -36.00)
>consensus
CUGG___UACAUGG____ACC_________UGGUCUACUGUCUACUGGCGGUGGCGUGAACGUGCAAACAUGUUGCACAUGAGAGAGGCUGCCGCUAAAGUACUUGUACUUGUCAUAUUG
.............................................(((((((((((....)((((((.....)))))).........))))))))))(((((....)))))......... (-24.82 = -25.32 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:36 2006