Locus 8612

Sequence ID 3R_DroMel_CAF1
Location 23,010,287 – 23,010,385
Length 98
Max. P 0.594177
window13843

overview

Window 3

Location 23,010,287 – 23,010,385
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.38
Mean single sequence MFE -25.04
Consensus MFE -16.10
Energy contribution -16.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.64
SVM decision value 0.12
SVM RNA-class probability 0.594177
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23010287 98 - 27905053
UGCCCCGCCCAUCUGGAGAUCUGUCCAUCUUCCC---UCCACUGGCGACCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUC-CAGA
(((((((((((..(((((...............)---)))).))).....(((......((((.....))))......))).....)))).))))..-.... ( -29.66)
>DroPse_CAF1 26487 76 - 1
UGCAGUCUC----------------CGUC---UC---UCCA----UGGCCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUCCCAGA
.........----------------....---((---(...----..((((((......((((.....))))....((((...)))).)))))).....))) ( -20.00)
>DroSim_CAF1 1166 101 - 1
UGGCCCGCCCAUCUGGCGAUCUGCCCAUCAUCCCUCCUCCACUGGCGACCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUC-CAGA
.(((.((((.....))))....)))................((((...(((((......((((.....))))....((((...)))).)))))...)-))). ( -30.20)
>DroEre_CAF1 16462 82 - 1
UGCCCAGCCCA----------------UCUUCCA---UCCACUGGCGACCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUC-CAGA
...........----------------.......---....((((...(((((......((((.....))))....((((...)))).)))))...)-))). ( -21.70)
>DroYak_CAF1 16708 90 - 1
UGCCCCGCCCAUCGGA--------CCAUCUUUGC---UCCACUGGCGACCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUC-CAGA
(((((((((((..(((--------.((....)).---)))..))).....(((......((((.....))))......))).....)))).))))..-.... ( -28.70)
>DroPer_CAF1 12397 76 - 1
UGCAGUCUC----------------CGUC---UC---UCCA----UGGCCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUCCCAGA
.........----------------....---((---(...----..((((((......((((.....))))....((((...)))).)))))).....))) ( -20.00)
>consensus
UGCCCCGCCCA______________CAUCUUCCC___UCCACUGGCGACCGCCUCCCACUGCUAAAUGAGCAUUUCCUGGCAUCCAGCGGCGGCAUC_CAGA
..............................................(.(((((......((((.....))))....((((...)))).))))))........ (-16.10 = -16.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:31 2006