Locus 8611

Sequence ID 3R_DroMel_CAF1
Location 23,010,131 – 23,010,223
Length 92
Max. P 0.898468
window13842

overview

Window 2

Location 23,010,131 – 23,010,223
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 87.80
Mean single sequence MFE -20.06
Consensus MFE -14.34
Energy contribution -14.46
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -2.50
Structure conservation index 0.71
SVM decision value 1.00
SVM RNA-class probability 0.898468
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23010131 92 - 27905053
AAAAAAAAAAAGAAACAUCGGAUCUUCAAUUUUUAUGGGCCCAUGCAUAGGAGGAGUUGGAAAAAAUCAGAGAAAACUCUUGAUUUUUGAGG
.................((.(((((((......((((....)))).....))))).)).))(((((((((((....))).)))))))).... ( -16.90)
>DroSec_CAF1 12683 84 - 1
A-----AAAGAGAAACAUCGGAUCUUCAAUUUUUAUGGGCCCAUGCAUAGG---AGUUGGAAAAAAUCAGAGAAAACUCUUGAUUUUUAAGG
.-----..................(((((((((((((........))))))---)))))))(((((((((((....))).)))))))).... ( -18.90)
>DroSim_CAF1 1017 85 - 1
AA----AAAAAGAAACAUCGGAUCUUCAAUUUUUAUGGGCCCAUGCAUAGG---AGUUGGAAAAAAUCAGAGAAAACUCUUGAUUUUUAAGG
..----..................(((((((((((((........))))))---)))))))(((((((((((....))).)))))))).... ( -18.90)
>DroEre_CAF1 16312 86 - 1
AA------AAAGAAUCAUCGGAUCUUCACUUUUUAUGCGCCCAUGCAUAGGAAGAGUUGAAAGAAAUCAGAGGAAACUCUUGAUUUUAGAGG
..------...............((((.(((((((((((....)))))))))))........((((((((((....))).))))))).)))) ( -25.10)
>DroYak_CAF1 16553 91 - 1
AGA-AAAAACAGAAACAUUGGAUCUUCAAUUUUUAUGGGCCCAUGCAUAGGAAGAGUUGAAAGAAAUCAGAGGAAACUCUUGAUUUUAGAGG
...-....................((((((((((....((....)).....)))))))))).((((((((((....))).)))))))..... ( -20.50)
>consensus
AA____AAAAAGAAACAUCGGAUCUUCAAUUUUUAUGGGCCCAUGCAUAGGA_GAGUUGGAAAAAAUCAGAGAAAACUCUUGAUUUUUGAGG
........................(((((((((((((........))))))...)))))))(((((((((((....))).)))))))).... (-14.34 = -14.46 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:30 2006