Locus 8606

Sequence ID 3R_DroMel_CAF1
Location 23,002,449 – 23,002,548
Length 99
Max. P 0.745380
window13837

overview

Window 7

Location 23,002,449 – 23,002,548
Length 99
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 84.62
Mean single sequence MFE -33.72
Consensus MFE -22.54
Energy contribution -24.34
Covariance contribution 1.80
Combinations/Pair 1.17
Mean z-score -2.07
Structure conservation index 0.67
SVM decision value 0.46
SVM RNA-class probability 0.745380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23002449 99 + 27905053
GUGGCAGAUCUCGUCUCUCG------GAUGACGACAAAAAGCUGGCAAUCUGCGAUUGAUGAGCUUAAUGAUGUCUUCAUCGGGGCGAGAUCGGUUCCCAUGGCC
..(((.(((((((((((...------(((((.((((..(((((.((((((...))))).).))))).....)))).))))))))))))))))((...))...))) ( -39.40)
>DroSec_CAF1 4993 99 + 1
GUGGCAGAUCUCGUCUCUCG------GAAGACGACAAAAAGCUGGCAAUCUGCGAUUGAUGAGCUUAAUGAUGUCUUCAUCGGGGCGAGAUCGGUUCCCAUGGCC
..(((.(((((((((((...------(((((((.((..(((((.((((((...))))).).)))))..)).)))))))...)))))))))))((...))...))) ( -42.80)
>DroEre_CAF1 8689 99 + 1
GAGGAAUCCCUCGUCUCUCG------AAAGACGACAAAAAGCUGGCAAUCUGCGAUUGAUGAGCUUAAUGAUGUCUUCAUCGGGGCGAGAUCGGUUCCCAUGGCC
(.((((((.((((((((...------.((((((.((..(((((.((((((...))))).).)))))..)).))))))....))))))))...)))))))...... ( -35.10)
>DroYak_CAF1 8882 95 + 1
GUGGAAUCCCUCGUCUCUUG----------ACGACAAAAAGCUGGCAAUCUGCGAUUGAUGAGCUUAAUGAUGUCUUCAUCGGGGCGAGAUCGGUUCCCAUGGCC
(.((((((.((((((((.((----------(.((((..(((((.((((((...))))).).))))).....)))).)))..))))))))...)))))))...... ( -33.40)
>DroAna_CAF1 6289 96 + 1
--G---GAU----UCUUUCAUAAAAAAAAGACAACAAAAAGCUGGCAGGCUGCGAUUGAUGGGCUUAAUGAUGUCUUCAUCGGACAGAGAUCGGUUCCCAUGACU
--.---...----(((((........)))))(((.....((((....))))....)))(((((.....((((.(((((....)).))).))))...))))).... ( -17.90)
>consensus
GUGGAAGAUCUCGUCUCUCG______AAAGACGACAAAAAGCUGGCAAUCUGCGAUUGAUGAGCUUAAUGAUGUCUUCAUCGGGGCGAGAUCGGUUCCCAUGGCC
......(((((((((((.....................(((((.((((((...))))).).)))))...((((....)))))))))))))))((((.....)))) (-22.54 = -24.34 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:25 2006