| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,999,243 – 22,999,363 |
| Length | 120 |
| Max. P | 0.842014 |
| Location | 22,999,243 – 22,999,363 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -49.38 |
| Consensus MFE | -27.71 |
| Energy contribution | -28.47 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.842014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22999243 120 - 27905053 GAGCUGCAGCAUGCAAAAUUGGCUGCCCUCACCUCCAUUGUGGAGGUCAAGUUGGAAACGGCCCGCGUGGCCGAUGGAUCGGGUCACAGUCUGCUGAUAGGAGUGCUAUGCGGUGUCUUU (((..(((((...........))))).)))((((((.....))))))......(....)(((((((((((((.....(((((...........)))))....).))))))))).)))... ( -44.00) >DroVir_CAF1 1707 120 - 1 CAGCUGCAGCACGCGAAGCUGGCGGCACUCACCUCCAUACUGGAAGUCAAGCUGGAGACGGCGCGCGUGGCUGAUGGCAACAGCCACAGUCUGCUUAUUGGCGUGCUGUGCGGCAUCUUU ..((((((((((((.((((((((((......))(((.....))).)))).((((....))))))(((.(((((.((((....))))))))))))...)).))))))..))))))...... ( -55.70) >DroGri_CAF1 5902 120 - 1 CAGCUGCAGCAUGCGAAACUGGCUGCGCUCACGUCCAUACUGGAGGUCAAACUGGAGACGGCUCGUGUGGCUGAUGGCAAUAGUCACAGUUUGCUCAUUGGCAUCCUCUGUGGAAUCUUC .(((.(((((...........))))))))....((((((..(((.(((((.(((....)))...(.(..((((.((((....))))))).)..).).))))).)))..))))))...... ( -40.90) >DroWil_CAF1 6769 120 - 1 GAACUGAAACAUGCCAAGCUAGCGGCACUCACCUCGAUUUUGGAGGUGAAACUGGAGACGGCUCGCAUUGCCGAUGGAUCUGGACACAGUCUUUUGAUUGGUGUCCUCUGUGGCAUUUUC .....((((.((((((..(((.(((((.(((((((.......)))))))..(((....))).......))))).)))....((((((((((....)))).))))))....)))))))))) ( -46.60) >DroMoj_CAF1 5438 120 - 1 CAGCUGCAGCACGCCAAGCUGGCGGUUCUCACCUCCAUACUGGAGGUCAAGCUGGAGACGGCGCGCGUGGCCGAUGGGAACAGCCACAGCCUGCUCAUUGGCGUGCUCUGCGGCAUCUUC ..(((((((((((((((...(((((.....((((((.....))))))...((((....))))((..(((((...((....))))))).)))))))..)))))))))..))))))...... ( -62.70) >DroAna_CAF1 3320 120 - 1 GAACUGCAGCACGCCAAGCUGGCUGCUUUAACCUCCAUACUGGAGGUCAAACUGGAAACGGCAAGGGUGGCCGACGGUUCGGGUCACAGCCUGCUGAUUGGAGUCCUGUGCGGUGUGUUC .......((((((((..((((((..((((.((((((.....))))))....(((....)))..))))..))))..(((((.(((((........))))).))).)).))..)))))))). ( -46.40) >consensus CAGCUGCAGCACGCCAAGCUGGCGGCACUCACCUCCAUACUGGAGGUCAAACUGGAGACGGCGCGCGUGGCCGAUGGAAACAGUCACAGUCUGCUGAUUGGCGUCCUCUGCGGCAUCUUC ..((((((..((((..(((.(((.((....((((((.....))))))....(((....)))...))(((((((.......))))))).))).))).....))))....))))))...... (-27.71 = -28.47 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:24 2006