Locus 8601

Sequence ID 3R_DroMel_CAF1
Location 22,995,921 – 22,996,012
Length 91
Max. P 0.510715
window13829

overview

Window 9

Location 22,995,921 – 22,996,012
Length 91
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -36.87
Consensus MFE -29.60
Energy contribution -30.43
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.80
SVM decision value -0.04
SVM RNA-class probability 0.510715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22995921 91 + 27905053
UAAAAAGGCGCAGCCGCGGCAGAGGCAGCAAUUGUGAUUAGAACGACACGACAGGCACGACAUGCGACAUAUGAGACGAUGCAUUUGCUGC-----------------------------
......(((...)))((((((((.(((((..(((((..........)))))...))....((((.....))))......))).))))))))----------------------------- ( -23.20)
>DroSec_CAF1 3541 120 + 1
UAAAAAGGCGCAGCCGCGGCAGAGGCAGCAAUUGUGAUUAGAACGACACGACAGGCACGACAUGCGACAUAUGAGACGAUGCAUUUGCUGCAGUGGCAGUUGCUGAUGUCGCUGCUGCCU
......((.(((((.((((((....((((((((((.(((.........(....)((((((.(((((.(.........).)))))))).)))))).)))))))))).)))))).))))))) ( -43.40)
>DroSim_CAF1 3560 120 + 1
UAAAAAGGCGCAGCCGCGGCAGAGGCAGCAAUUGUGAUUAGAACGACACGACAGGCACGACAUGCGACAUAUGAGACGAUGCAUUUGCUGCAGUGGCAGUUGCUGAUGUCGCUGCUGCAU
.........(((((.((((((....((((((((((.(((.........(....)((((((.(((((.(.........).)))))))).)))))).)))))))))).)))))).))))).. ( -44.00)
>consensus
UAAAAAGGCGCAGCCGCGGCAGAGGCAGCAAUUGUGAUUAGAACGACACGACAGGCACGACAUGCGACAUAUGAGACGAUGCAUUUGCUGCAGUGGCAGUUGCUGAUGUCGCUGCUGC_U
......(((...)))((((((((.(((((..(((((..........)))))...))....((((.....))))......))).)))))))).((((((((.((....)).)))))))).. (-29.60 = -30.43 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:17 2006