Locus 8599

Sequence ID 3R_DroMel_CAF1
Location 22,995,014 – 22,995,133
Length 119
Max. P 0.766173
window13819

overview

Window 9

Location 22,995,014 – 22,995,133
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.59
Mean single sequence MFE -19.62
Consensus MFE -9.74
Energy contribution -11.55
Covariance contribution 1.81
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.50
SVM decision value 0.52
SVM RNA-class probability 0.766173
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22995014 119 - 27905053
ACCUUUACCAAAAAAUCACAAUUAAAGUGACUAAUUCGAUUUGAAUGUCAAAACAUUAGGAUCUAAUCCCACUGGCCAUUUAACCCCUCUUAGUCGCUCAUUAAUUGAUUUACCAAGCC-
..................((((((((((((((((...((((..(((((....)))))..))))..........((........))....)))))))))..)))))))............- ( -21.60)
>DroSec_CAF1 2665 119 - 1
ACCUUUACCAAAAAAUCACAAUUAAAGUGACUAAUUCGAUUUGAAUGUCAAAACAUUAGGAUCUAAUCCCACUGGCCAUUUAACCCCUCUUAGUCGCUCAUUAAUUGAUUUACCAAGCC-
..................((((((((((((((((...((((..(((((....)))))..))))..........((........))....)))))))))..)))))))............- ( -21.60)
>DroSim_CAF1 2676 118 - 1
ACCUUUACCAAAAAAUCACAAUUAAAGUGACUAAUUCGAUUUGAAUGUCAAAACAUUAGGAUCUAAUCCCACUGGCCAUUUAACCCCUUUUAGUCGCUCAUUAAUUGAUUUACCAAGC--
..................((((((((((((((((...((((..(((((....)))))..))))..........((........))....)))))))))..)))))))...........-- ( -21.70)
>DroPer_CAF1 2542 102 - 1
-UCUCUCUGAUAGAUUCUCAAUUAACAUGAAAAAUAUGA----------ACAGCAUUAAGAGUUAAUCCUCUGAGCAAUUUAG-------UUGCCCCCCACUAAUUGAUUAGCUCUGCGC
-......................................----------...(((...((((......))))((((...((((-------(((........)))))))...))))))).. ( -13.60)
>consensus
ACCUUUACCAAAAAAUCACAAUUAAAGUGACUAAUUCGAUUUGAAUGUCAAAACAUUAGGAUCUAAUCCCACUGGCCAUUUAACCCCUCUUAGUCGCUCAUUAAUUGAUUUACCAAGCC_
..................((((((((((((((((...(.((((.....)))).)....((........))...................)))))))))..)))))))............. ( -9.74 = -11.55 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:09 2006