Locus 8597

Sequence ID 3R_DroMel_CAF1
Location 22,994,433 – 22,994,545
Length 112
Max. P 0.951502
window13810

overview

Window 0

Location 22,994,433 – 22,994,545
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.54
Mean single sequence MFE -48.53
Consensus MFE -27.88
Energy contribution -30.57
Covariance contribution 2.69
Combinations/Pair 1.10
Mean z-score -2.37
Structure conservation index 0.57
SVM decision value 1.41
SVM RNA-class probability 0.951502
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22994433 112 - 27905053
CGCAAUCCUUUUUGGCCAACAUUUGAUUAUCUCACGGCCAGAGUGGAGCAGAGUGGCUCCUCCUGGAGCCGCAGCUUGUG------GCUCUUGCUAUCGGGCGCUGCCAUCGGGGCGG--
(((..(((.((((((((..................)))))))).)))((((.((((((((....)))))))).(((((((------((....)))).))))).)))).......))).-- ( -50.97)
>DroSec_CAF1 2077 118 - 1
UGCAAUCCUUUUUGGCCAACAUUUGAUUAUCUCACGGCCAGAGUGGAGCAGAGUGGCUCCUCCUGGAGCCGCAGCUUGUGGCCGUGGCCGUUGCUAUCGGGCGCUGCCAUCGGGGCGG--
(((..(((.((((((((..................)))))))).))))))..((((((((....)))))))).(((((((((.(((.(((.......))).))).)))))..))))..-- ( -53.97)
>DroSim_CAF1 2097 118 - 1
UGCAAUCCUUUUUGGCCAACAUUUGAUUAUCUCACGGCCAGAGUGGAGCAGAGUGGCUCCUCCUGGAGCCGCAGCUUGUGGCCGUGGCUCUUGCUAUCGGGCGCUGCCAUCGGGGCGG--
(((..(((.((((((((..................)))))))).))))))..((((((((....)))))))).....(((.(((((((....)))).))).)))((((.....)))).-- ( -51.27)
>DroPer_CAF1 1956 94 - 1
GGCAAUCCUUUUUGGCCAACAUUUGAUUAUCUCUUGGCGGCU----------CUGGGUCCGUUCGAAGACC----------------CUGCCGCUAUCGGGUGCUGCCAUCGAGGCGGUC
(((...((((..((((...((((((((........((((((.----------..(((((........))))----------------).))))))))))))))..))))..))))..))) ( -37.90)
>consensus
UGCAAUCCUUUUUGGCCAACAUUUGAUUAUCUCACGGCCAGAGUGGAGCAGAGUGGCUCCUCCUGGAGCCGCAGCUUGUG______GCUCUUGCUAUCGGGCGCUGCCAUCGGGGCGG__
.((..(((.((((((((..................)))))))).))).....((((((((....))))))))..............))...((((....))))(((((.....))))).. (-27.88 = -30.57 +   2.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:01 2006