Locus 8596

Sequence ID 3R_DroMel_CAF1
Location 22,990,197 – 22,990,314
Length 117
Max. P 0.697239
window13809

overview

Window 9

Location 22,990,197 – 22,990,314
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.07
Mean single sequence MFE -32.06
Consensus MFE -27.64
Energy contribution -27.45
Covariance contribution -0.19
Combinations/Pair 1.22
Mean z-score -1.56
Structure conservation index 0.86
SVM decision value 0.34
SVM RNA-class probability 0.697239
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22990197 117 - 27905053
ACGUCACAAACGGGCAGAUAAUUCUGGCCGGGAAUGGCCAUAAAGUGACUGGUGCAGUUGCAGUUGUCCAGUUGAAGUAGCACAGUACUAAGGAUUAUACAUAAAUCUAUGA-AUUAA--
..(((((...(((.((((....)))).)))((.....)).....)))))((((((.(((((...............)))))...)))))).(((((.......)))))....-.....-- ( -29.36)
>DroSec_CAF1 6436 119 - 1
ACGUCACAAACGGGCAGAUAAUUCUGGCCGGGAAUGGCCAUAAAGUGACUGGUGCAAUUGCAGUUGUCCAGUUGCAGUAGCACAGUACUAAGGAUUAUACACAAAUCUAUGA-AUUAAGU
..(((((...(((.((((....)))).)))((.....)).....)))))..((((.((((((..(....)..)))))).))))........(((((.......)))))....-....... ( -35.30)
>DroEre_CAF1 6933 112 - 1
UAGUCACAGACGGGUAGGUAAUUCUGGCCGGGAAUAGCCAUAAAGUGACUGGUGCAGUUGCAGUUCUCGAGUUGGAGUAGCACAGUACUAUGAA---UGC---AAUACAUGGAAUGAA--
(((((((...(((.((((....)))).)))((.....)).....)))))))(((..((((((((((((......))).))).((......))..---)))---))).)))........-- ( -29.70)
>DroYak_CAF1 7210 115 - 1
UAGUCACAGGCGGGCAGGUAAUUCUGGCCGGGAAUGGCCAUAAAGUGACUGGUGCAGUUGCAGUUGUCCAGUUGGAGCAGCACAGUACUAUAUAUUAUUC---AAUAUAUGAAAUCAA--
(((((((...(((.((((....)))).)))((.....)).....)))))))((((.(((.((..(....)..)).))).)))).....((((((((....---)))))))).......-- ( -33.90)
>consensus
AAGUCACAAACGGGCAGAUAAUUCUGGCCGGGAAUGGCCAUAAAGUGACUGGUGCAGUUGCAGUUGUCCAGUUGGAGUAGCACAGUACUAAGGAUUAUAC___AAUAUAUGA_AUUAA__
..(((((...(((.((((....)))).)))((.....)).....)))))..((((.(((.((..(....)..)).))).)))).....((((((((.......))))))))......... (-27.64 = -27.45 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:59 2006