Locus 8595

Sequence ID 3R_DroMel_CAF1
Location 22,987,294 – 22,987,396
Length 102
Max. P 0.787134
window13808

overview

Window 8

Location 22,987,294 – 22,987,396
Length 102
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 68.36
Mean single sequence MFE -15.41
Consensus MFE -10.24
Energy contribution -10.20
Covariance contribution -0.04
Combinations/Pair 1.14
Mean z-score -1.27
Structure conservation index 0.66
SVM decision value 0.58
SVM RNA-class probability 0.787134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22987294 102 - 27905053
CUCUU---CAAUAUUUUAAAUGAACUUA-------------UCAAUG-CUUGUUUUUUGAAAUCAUCAAAACUUACCCUCGUAUUCGUAGUGCUCCUGCACUGCAUCUCACUAAUUUGG
.....---............(((.....-------------..((((-(..((.((((((.....))))))...))....))))).(((((((....)))))))...)))......... ( -15.40)
>DroSec_CAF1 3372 85 - 1
GUCUU---UAAUAAUUUAA-----CUUA--------------------------UUUUGAAAUCAUAAAAACCUACCCUCGUAUUCGUAGUGCUCCUGCACUGCAUCUCACUAAUUUGG
.((..---.(((((.....-----.)))--------------------------))..))..........................(((((((....)))))))............... ( -12.10)
>DroSim_CAF1 5546 85 - 1
GUCUU---CAAUAUUUUAA-----CUUA--------------------------UUUUGAAAUCAUCAAAACCUACCCUUGUAUUCGUAGUGCUCCUGCACUGCAUCUCACUAAUUUGG
.....---.(((((.....-----....--------------------------((((((.....)))))).........))))).(((((((....)))))))............... ( -14.37)
>DroEre_CAF1 3445 118 - 1
AUUUUGUUUUUUAAACUUU-UGCUUUUGAUCAUUUUUUUUAGCACUAAAAUGUGUUCCGGAAUCAUUAAAACUUACCCUUGUAUUUGUGCUGCUCCUGCACUGCAUCUGAAUGAUUUGG
...................-...(((((((.(((((....(((((......)))))..))))).))))))).....((...((((((((((((....)))..))))..)))))....)) ( -15.90)
>DroYak_CAF1 3569 100 - 1
AUUUU---CAAUAUACUUU-CGCAGUUA---------------UCUGAUAUAUUUUUUGAAAUCAUUCAAACUUACCCUUGUGUUUGUGGUGCUCCUGCACUGCAGCUGACUGAUUUGG
.....---.......((..-..((((((---------------.((.........((((((....))))))...............(..((((....))))..))).))))))....)) ( -19.30)
>consensus
AUCUU___CAAUAUUUUAA__G__CUUA_________________U____U_U_UUUUGAAAUCAUCAAAACUUACCCUUGUAUUCGUAGUGCUCCUGCACUGCAUCUCACUAAUUUGG
......................................................................................(((((((....)))))))............... (-10.24 = -10.20 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:58 2006