Locus 8594

Sequence ID 3R_DroMel_CAF1
Location 22,982,171 – 22,982,291
Length 120
Max. P 0.832934
window13807

overview

Window 7

Location 22,982,171 – 22,982,291
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.31
Mean single sequence MFE -33.67
Consensus MFE -29.14
Energy contribution -29.89
Covariance contribution 0.75
Combinations/Pair 1.10
Mean z-score -1.92
Structure conservation index 0.87
SVM decision value 0.72
SVM RNA-class probability 0.832934
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22982171 120 - 27905053
GACUGUCGAUGCCAACGGAUCGAUUAACAAACAUUUAAAAAGAGUGAGCACUGGAAAUUUAUCUAGUCUAGGGUAGUUAGUAGUCGGUUGGUUGUUUUGUUGCUUGGUGCUGAUGGUGUA
.(((((((..((((((.(((((((((.....(((((.....)))))((.((((((......))))))))...........))))))))).)))((......))..)))..)))))))... ( -31.40)
>DroSec_CAF1 13081 120 - 1
GACUGUCGGUGCCAACGGAUCGAUCGACAAACAUUAAAAAAGAGUGAGCACUGGAAAUUUAUCUAGUCUAGGGUAGUUAGUAGUCGGUUGGUUGUUUUGUUGCUUGGUGCUGAUGGUGUA
.((((((((..((((..(((((((((((...((((.......))))((.((((((......)))))))).............)))))))))))((......))))))..))))))))... ( -38.80)
>DroEre_CAF1 7008 116 - 1
GAGUGUCGCUGUCAACGGAUCGAUCGACAAACAUUAAAAAAGA----GCACUGGAAAUUUAUCUAGUCUAGGGUAGUUAGUAGUCAGUUGGUUGUUUUGUUGCUUGGUGCUGAUGGUGUA
......(((((((((((((.((((((((..(((((((.....(----(.((((((......)))))))).......))))).))..)))))))).))))))((.....)).))))))).. ( -30.20)
>DroYak_CAF1 13669 120 - 1
GACUGUUGGUGCCAACGGAUCGAUCGACAAACAUUAAAAAAGAGUGAGCACUGGAAAUUUAUAUAGUCUAGGGUAGUUAGUAGUCGGUUGGUUGUUUUGUUGCUUGGUGCUGAUGGUGUA
.(((((..(..((((..(((((((((((...((((.......)))).((.(((((...........))))).))........)))))))))))((......))))))..)..)))))... ( -34.30)
>consensus
GACUGUCGGUGCCAACGGAUCGAUCGACAAACAUUAAAAAAGAGUGAGCACUGGAAAUUUAUCUAGUCUAGGGUAGUUAGUAGUCGGUUGGUUGUUUUGUUGCUUGGUGCUGAUGGUGUA
.((((((((((((((((((.((((((((..(((((((.........((.((((((......)))))))).......))))).))..)))))))).)))))....)))))))))))))... (-29.14 = -29.89 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:58 2006