Locus 8593

Sequence ID 3R_DroMel_CAF1
Location 22,982,019 – 22,982,131
Length 112
Max. P 0.812551
window13806

overview

Window 6

Location 22,982,019 – 22,982,131
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 97.91
Mean single sequence MFE -24.50
Consensus MFE -22.71
Energy contribution -22.77
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -2.07
Structure conservation index 0.93
SVM decision value 0.65
SVM RNA-class probability 0.812551
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22982019 112 + 27905053
AAAACAAAGUGAAAAUUAAUUUCUUUCUUUAUUUUAUUCUAGGCGAAGAAAGCCCGCUCAUUGCCGCCAUCAAAUAAAAUAGCAUUAAUGCGUUCAACUGGUUGAUGGCACC
((((.((((.((((.....))))...)))).))))......(((((.((........)).)))))((((((((........(((....)))..........))))))))... ( -25.07)
>DroSec_CAF1 12930 111 + 1
AAAACAAAGUGAAAAUUAAUUUCU-UCUUUAUUUUAUUCUAGGCGAAGAAAGCCCGCUCAUUGCCGCCAUCAAAUAAAAUAGCAUUAAUGCGUUCAACUGGUUGAUGGCACC
((((.((((.((((.....)))).-.)))).))))......(((((.((........)).)))))((((((((........(((....)))..........))))))))... ( -25.17)
>DroEre_CAF1 6857 111 + 1
AAAACAAAGUGAAAAUUAAUUUUU-UUCUUAUUUUAUUCUAGGCGAAGAAAGCCCGCUCAUUGCCGCCAUCAAAUAAAAUAGCAUUAAUGCGUUCAACUGGUUGAUGGCACC
......(((.(((((.....))))-).)))...........(((((.((........)).)))))((((((((........(((....)))..........))))))))... ( -24.27)
>DroYak_CAF1 13518 111 + 1
AAAACAAAGUGAAAAUUAAUUUCU-UUCUUAUUUUAUUCUAGGCGAAGAAAGCCCGCUCAUUGCCGCCAUCAAAUAAAAUAGCAUUAAUGCGUUCAACUGGUUGAUGGCACC
......(((.((((.....)))).-..)))...........(((((.((........)).)))))((((((((........(((....)))..........))))))))... ( -23.47)
>consensus
AAAACAAAGUGAAAAUUAAUUUCU_UCCUUAUUUUAUUCUAGGCGAAGAAAGCCCGCUCAUUGCCGCCAUCAAAUAAAAUAGCAUUAAUGCGUUCAACUGGUUGAUGGCACC
((((.((((.((((.....))))...)))).))))......(((((.((........)).)))))((((((((........(((....)))..........))))))))... (-22.71 = -22.77 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:56 2006